Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0645.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0548 - 10467342-10468810,10470309-10471632                       29   2.8  
02_05_0426 - 28881671-28881753,28882130-28882621,28882802-288828...    28   4.9  
01_04_0028 - 15235520-15235756,15236667-15236888                       28   6.5  
09_04_0254 + 16131779-16132475,16132609-16132768,16132944-161329...    27   8.6  
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    27   8.6  
05_04_0442 - 21280804-21280897,21281287-21281684                       27   8.6  
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340...    27   8.6  

>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 415 VFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTSTYVCSA 272
           VF  L+   +WV  K +W     RG+PG  +   +  +G       SA
Sbjct: 821 VFAQLDGDGEWVLEKRVWLPAAARGLPGYDEGYFQEQNGEAIVVAASA 868


>02_05_0426 -
           28881671-28881753,28882130-28882621,28882802-28882864,
           28883251-28883440,28883534-28883642,28883952-28884363,
           28884967-28885196,28885294-28885403
          Length = 562

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 329 FPWHPSHFHVSPQN 370
           FPWH  HF + PQN
Sbjct: 298 FPWHLLHFFIPPQN 311


>01_04_0028 - 15235520-15235756,15236667-15236888
          Length = 152

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 248 VVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIV--LVGEERP 105
           VVG  Q SF SP+   L       D+Q++  W M   ++++  +VG   P
Sbjct: 9   VVGSGQASFRSPHFDALTTGTDNGDMQDQRSWAMTTKHDMMARVVGASAP 58


>09_04_0254 +
           16131779-16132475,16132609-16132768,16132944-16132992,
           16133158-16133271,16133434-16133958,16135538-16135969,
           16138882-16138956,16139530-16139625,16140610-16140725,
           16140822-16140992,16141080-16141239,16141328-16141513,
           16141624-16141752,16141837-16141915,16142034-16142143
          Length = 1032

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 312 RISRWYFPGTPLTFMFHHRTLRKTQSNAFSKSTNTMCMNP 431
           R   W +   PL      R LR  +SNA++     +C+ P
Sbjct: 682 RFMTWMYISVPLMLYVGERMLRALRSNAYAVKILKVCLLP 721


>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = -3

Query: 242 GLPQGSFLSPYLFILI 195
           GL QG  LSPYLFIL+
Sbjct: 98  GLRQGDPLSPYLFILV 113


>05_04_0442 - 21280804-21280897,21281287-21281684
          Length = 163

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 207 VHPNNVCSNNGHTGRGALVYAVC*RNCSRWRGKA*G-IDE 91
           V  NN C     TGR A   AV   +CSR R  A G IDE
Sbjct: 31  VSKNNRCGKKAATGRKAAAAAV--ESCSRKRAAAAGDIDE 68


>02_01_0473 -
           3403547-3404241,3404455-3404983,3405299-3405477,
           3405868-3405952,3406136-3406482,3407061-3407159,
           3408135-3408636
          Length = 811

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 275 RWRYQRVSV--VVGLPQGSFLSPYLFILIMYALTTDIQEEA 159
           +W    V +  + GL QG  LSPYLF+ I   L+  +++++
Sbjct: 267 KWTMSCVDICPIRGLRQGDPLSPYLFLFIADGLSHILEKKS 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,900,069
Number of Sequences: 37544
Number of extensions: 340076
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)