Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0645.Seq
         (598 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros...    31   1.2  
AJ278684-2|CAB99192.1|  989|Drosophila melanogaster endonuclease...    31   1.6  
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros...    29   3.6  

>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for type I retrotransposable
           element  R1Dm.  ).
          Length = 1021

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 257 VSVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCML--FANEIVLVGEERPEA 99
           V V  G PQGS   P+++ ++M  L   +Q   P+C L  +A++++L+ E    A
Sbjct: 626 VPVTRGCPQGSISGPFIWDILMDVL---LQRLQPYCQLSAYADDLLLLVEGNSRA 677


>AJ278684-2|CAB99192.1|  989|Drosophila melanogaster
           endonuclease/reverse transcriptase protein.
          Length = 989

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
 Frame = -3

Query: 251 VVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVL--VGEERPE----A*MR 90
           V  G+PQGS L P L+ ++   + +  +        FA+++ +  V +  PE    + + 
Sbjct: 609 VSAGVPQGSVLGPILWNIMYDGILSISKPRGVELHCFADDVAITAVAKTIPELQDISNVA 668

Query: 89  LAK*KERLENVGMKISRTKTE 27
           +    E LE VG+KI+  KTE
Sbjct: 669 ITAAIEWLEKVGLKIAAHKTE 689


>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for type II retrotransposable
           element  R2Dm.  ).
          Length = 1057

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
 Frame = -3

Query: 272 WRYQRVSVVVGLPQGSFLSPYLFILIMYALTTDIQEE--------APWCMLFANEIVLVG 117
           W  +      G+ QG  LSP LF L+M  L   +  E              FA+++VL  
Sbjct: 528 WSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPSEIGAKVGNAITNAAAFADDLVLFA 587

Query: 116 EERPEA*MRLAK*KERLENVGMKISRTK 33
           E R    + L K  + L  VG+K++  K
Sbjct: 588 ETRMGLQVLLDKTLDFLSIVGLKLNADK 615


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,128,349
Number of Sequences: 53049
Number of extensions: 597978
Number of successful extensions: 1694
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)