Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0645.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 35 0.051
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 34 0.067
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 34 0.067
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 31 0.62
Z99280-2|CAE18017.1| 129|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 29 3.3
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 28 5.8
AL021177-2|CAA15978.1| 192|Caenorhabditis elegans Hypothetical ... 27 7.7
AC006656-1|AAF39881.1| 592|Caenorhabditis elegans Hypothetical ... 27 7.7
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 34.7 bits (76), Expect = 0.051
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -1
Query: 418 MVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTST 287
+VF+D +KAFD V + +W ++ +G G Y L++ + +T
Sbjct: 517 LVFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLKECYKNCTT 560
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 34.3 bits (75), Expect = 0.067
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -1
Query: 418 MVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTST 287
+VF+D +KAFD V + +W ++ +G G Y L++ + +T
Sbjct: 688 LVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKNCTT 731
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 34.3 bits (75), Expect = 0.067
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = -1
Query: 418 MVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTST 287
+VF+D +KAFD V + +W ++ +G G Y L++ + +T
Sbjct: 427 LVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECYKNCTT 470
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 31.1 bits (67), Expect = 0.62
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -1
Query: 418 MVFVDLEKAFDWVFRKVLW*NMKVRGVPGKYQRLIRATHGRTST 287
+VF+D +KAFD V + +W ++ +G Y L++ + +T
Sbjct: 39 LVFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTT 82
>Z99280-2|CAE18017.1| 129|Caenorhabditis elegans Hypothetical
protein Y57G11B.6 protein.
Length = 129
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = -2
Query: 273 LAIPTS*CGGRLTPGIIFKPLPVHPNNVCSNNGHT 169
+++P GG ++ + F P+ ++PNNV +N+G++
Sbjct: 42 ISVPPGSSGGGISSQLAF-PIQLYPNNVYNNHGYS 75
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 242 GLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVLVGEERP 105
G+P+GS P+LF++ + +L + C FA+++ + P
Sbjct: 56 GVPKGSVSGPFLFLIFINSLLLSVPPSIS-CSAFADDLKVYSHSPP 100
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -3
Query: 287 VRMLRWRYQRVSVVVGLPQGSFLSPYLFILIMYALTTDIQEEAPWCMLFANEIVL 123
VR+ + R G+PQG+ LSP LF + + +++ + E+ C FA++ L
Sbjct: 61 VRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVA-CKQFADDTKL 114
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 143 FANEIVLVGEERPEA*MRLAK*KERLENVGMKISRTKTE 27
FA++IVLV A L + E+ +VG+KI+ KT+
Sbjct: 572 FADDIVLVAHNPRTASQMLTELVEKCSSVGLKINTGKTK 610
>AL021177-2|CAA15978.1| 192|Caenorhabditis elegans Hypothetical
protein Y1A5A.1 protein.
Length = 192
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 335 WHPSHFHVSPQNLTENPIKRFFQINKHHVH 424
WHP HF S + PIK+ FQ +H +
Sbjct: 86 WHPDHFTCSS---CKRPIKQTFQAADNHAY 112
>AC006656-1|AAF39881.1| 592|Caenorhabditis elegans Hypothetical
protein H12I13.1 protein.
Length = 592
Score = 27.5 bits (58), Expect = 7.7
Identities = 22/88 (25%), Positives = 36/88 (40%)
Frame = +1
Query: 7 TKSQNMCSVFVRLIFIPTFSNLSFYFASLIYASGLSSPTRTISLANSIHQGASSCMSVVR 186
TKS+N+ FVR F F N+ +Y + P ++ +S ++ C +
Sbjct: 226 TKSENVGKPFVRTTFYANFKNVVYYKGTATTLGRGLQPLLHDAIISSEYKDFRKCQMLFV 285
Query: 187 AYIIRMNR*GLKNDPWGKPTTTLTRWYR 270
I N+ L + TL R+YR
Sbjct: 286 MSIQITNQSFLYRLAKNSFSITLDRFYR 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,987,004
Number of Sequences: 27780
Number of extensions: 306987
Number of successful extensions: 812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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