Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0645.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.32 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.32 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.75 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 299 TVRSSNKPLVFPWHPSHFHVSPQNLT 376
           TVR   K   +P+HPS    S ++LT
Sbjct: 380 TVRGKEKTCYYPYHPSTQEDSEEHLT 405


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 299 TVRSSNKPLVFPWHPSHFHVSPQNLT 376
           TVR   K   +P+HPS    S ++LT
Sbjct: 380 TVRGKEKTCYYPYHPSTQEDSEEHLT 405


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 327 TSGLFELRTVEPVRTYAP 274
           T+ +FEL TVEP+ T  P
Sbjct: 265 TNNIFELVTVEPILTERP 282


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 99  CLRPFLSNENNFVSKQ--HTPRRLF 167
           CL P   +ENNF S++     RR+F
Sbjct: 628 CLLPRPKSENNFASQELSREGRRIF 652


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +3

Query: 99  CLRPFLSNENNFVSKQ--HTPRRLF 167
           CL P   +ENNF S++     RR+F
Sbjct: 596 CLLPRPKSENNFASQELSREGRRIF 620


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -2

Query: 123 RWRGKA*GIDETGKIERKVGKRGYEDQSNKN 31
           RW G A G+           K  Y++Q+N +
Sbjct: 92  RWPGDATGLSNRSSTSSNDPKNQYKNQNNNH 122


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 370 VLW*NMKVRGVPGKYQRLIRATHGRTSTYV 281
           +L  N    G  G YQ  +  TH  +  YV
Sbjct: 73  ILMYNSADEGFDGTYQTSVVVTHNGSCLYV 102


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 54  THVFQPFFLFCQSHLCLRPFLSNENNFVSKQHTPRRLFLYV 176
           T V   F L  Q H+   P + + +NF+ ++   R  + +V
Sbjct: 439 TVVIGTFKLHRQPHIYPNPDVFDPDNFLPEKTANRHYYAFV 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,606
Number of Sequences: 438
Number of extensions: 3887
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)