Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0645.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27970.1 68418.m03369 expressed protein                             31   0.77 
At5g38670.1 68418.m04676 F-box family protein similar to SKP1 in...    29   3.1  
At5g05840.1 68418.m00642 expressed protein contains Pfam profile...    29   3.1  
At4g26640.2 68417.m03839 WRKY family transcription factor contai...    28   4.1  
At4g26640.1 68417.m03838 WRKY family transcription factor contai...    28   4.1  
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein...    28   4.1  
At3g17460.1 68416.m02229 PHD finger family protein contains Pfam...    28   4.1  
At3g17840.1 68416.m02274 leucine-rich repeat transmembrane prote...    27   7.2  
At3g10510.1 68416.m01261 kelch repeat-containing F-box family pr...    27   9.5  

>At5g27970.1 68418.m03369 expressed protein
          Length = 1629

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 243  YHHTNSLVSPAEHTYVLVLPCVARISRWYFP 335
            +H  NS     + T+VLVL  +AR+ R YFP
Sbjct: 1063 HHSRNSAQKQWDETFVLVLGGIARLFRSYFP 1093


>At5g38670.1 68418.m04676 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 291

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 291 LVLPCVARISRWYFPGTPL 347
           L+L CVAR+SR Y+P   L
Sbjct: 15  LILSCVARVSRLYYPALSL 33


>At5g05840.1 68418.m00642 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620);
           expression supported by MPSS
          Length = 439

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 266 IASGAYVRTGSTVRSSNKPLVFPWHPSHFHVSPQNLTENPIKRFFQ 403
           + SG  +  GS  + + +    PWHPSH    P      P++RF Q
Sbjct: 190 VVSGCKISAGSDAKVAWRQT--PWHPSHASRGP----PRPLRRFLQ 229


>At4g26640.2 68417.m03839 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 557

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 237 TPGIIFKPLPVHPNNVCSNNGHTGRG 160
           T G +FKP PVH +   S++ +TGRG
Sbjct: 82  TTGSLFKPRPVHIS--ASSSSYTGRG 105


>At4g26640.1 68417.m03838 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 485

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 237 TPGIIFKPLPVHPNNVCSNNGHTGRG 160
           T G +FKP PVH +   S++ +TGRG
Sbjct: 10  TTGSLFKPRPVHIS--ASSSSYTGRG 33


>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 372

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 352 SCFTTEPYGKPNQTLFPNQQTPC 420
           S  T+  YG  N T FP+ Q PC
Sbjct: 145 STTTSNSYGNGNDTKFPDHQCPC 167


>At3g17460.1 68416.m02229 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 198

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 319 AAGISLAPLSLSCFTTEPYGKPNQTLFPNQQ 411
           A+  S AP   S FT +P   PN T FP  +
Sbjct: 87  ASSSSSAPPPASSFTCQPCSNPNFTFFPKSR 117


>At3g17840.1 68416.m02274 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           from [Petunia integrifolia]
          Length = 647

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 37  VRLIFIPTFSNLSFYFASLIYASGLSS 117
           +RL F P+ SNLS +F+ L+ +  L S
Sbjct: 1   MRLFFTPSMSNLSIFFSILLLSLPLPS 27


>At3g10510.1 68416.m01261 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 371

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 246 HHTNSLVSPAEH-TYVLVLPCVARISRWY 329
           + T SL+   E   YVL+  C+  ++RWY
Sbjct: 56  YKTRSLLGCTEDCVYVLIEDCILEVARWY 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,056,624
Number of Sequences: 28952
Number of extensions: 281091
Number of successful extensions: 670
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)