Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0644.Seq
         (489 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   0.85 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   2.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   3.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.0  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 17  KMGIDINHKHDRKV 58
           K+G++INHK D +V
Sbjct: 406 KLGLEINHKEDFRV 419


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 274 LSPLPRHQTLTSWLLHVARQT 212
           +S +PRH+ LT+  + + R+T
Sbjct: 111 ISSIPRHEKLTAAEIKLTRET 131


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
 Frame = -3

Query: 262 PR-HQTLTSWLLHVARQTRHRDWW 194
           PR  QTL  WL H        DW+
Sbjct: 654 PRWRQTLAMWLNHNPNYAEVTDWY 677


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 339  FGNMKSSHRHLRYLVQS 289
            FG + S H HL  L++S
Sbjct: 1301 FGKLCSLHHHLSKLIKS 1317


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,435
Number of Sequences: 336
Number of extensions: 2189
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)