Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0644.Seq
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    81   1e-16
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    80   2e-16
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    29   0.38 
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   0.87 
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   1.1  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    27   1.5  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.5  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    26   2.7  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   2.7  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    26   3.5  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   4.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.6  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    25   6.1  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 39/60 (65%), Positives = 46/60 (76%)
 Frame = +1

Query: 247 GFDAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           G   V+VGTVT+D RL  +PK++VAAL  T+ ARARIL AGGE+LT DQLAL APTG  T
Sbjct: 79  GKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNT 138



 Score = 58.4 bits (135), Expect = 5e-10
 Identities = 26/67 (38%), Positives = 42/67 (62%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MGIDI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 200 ISVSRLA 220
           IS+S++A
Sbjct: 61  ISISKIA 67


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 39/66 (59%), Positives = 49/66 (74%)
 Frame = +1

Query: 229 EEANS*GFDAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSA 408
           + A+S     VVVGTVT+D R+  +PK+++AAL  T+ ARARIL AGGE+LT DQLAL A
Sbjct: 73  KSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRA 132

Query: 409 PTGXKT 426
           PTG  T
Sbjct: 133 PTGSNT 138



 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 25/67 (37%), Positives = 42/67 (62%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MGIDI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPP
Sbjct: 1   MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60

Query: 200 ISVSRLA 220
           IS+S++A
Sbjct: 61  ISISKIA 67


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 405 TKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGIKPSRVGFFM 226
           T   LI +  F   +Q  C   +   +S  RH   L++S ++      HG+ P + G F+
Sbjct: 20  TSLALIHNDKFLCCAQGPCLRIYDVSES--RHESDLIKSILLPFHNRIHGMLPCKQGLFV 77

Query: 225 W 223
           W
Sbjct: 78  W 78


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 283 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 396
           D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 59  DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 384 SKNFSSSSQNACTSFFGNMKSSHRH 310
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 296 YSLTSFVTVPTTTASNPHELASSCGAPNETQRL 198
           Y +T+ +   TTT SN   + SSCG  N  QR+
Sbjct: 131 YPITTCLNDDTTTRSNNQVIQSSCG--NNLQRI 161


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
 Frame = -1

Query: 423 LXASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP---HYHGI 253
           L A  ST S   K     S  +     F    K S    RYL Q   IC+ P   H   +
Sbjct: 53  LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSL 112

Query: 252 KPSRVGFFMWRAKRDTEI 199
            PS+        K D EI
Sbjct: 113 SPSKSTIDNNERKLDNEI 130


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 381 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 268
           KN+ SS  +  TS + N+ +S+R +R  +QS V  + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 297 VQSHVICDCPHYHGIKP--SRVGFFMWRAKRDTEIGGRLIRL 178
           V  H+ C+  ++H      S      WR   D++I  RL+RL
Sbjct: 335 VAKHLCCELKYFHHATSLGSVESLIEWRRMTDSKIDPRLVRL 376


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
 Frame = +1

Query: 64  HRS*ISRYLLEVTCKALQILGQTYKCQIQSDR--STPALYEPYQPATNLCVSFGAPHEEA 237
           HRS I  YL  + C  L  +G   +  I + R   +    + +   T L V F   +  A
Sbjct: 105 HRSPIHEYLKLIVCSPLYFMGILEETDIVNVRLFESETFAKSFNSITTLSVRFSVKNTPA 164

Query: 238 NS*GFDAVVVGTVTNDVRLYKIPKMTVAALH 330
            +      +V   + D+  Y+      + LH
Sbjct: 165 QA------IVKIYSKDIEFYEATLAFASKLH 189


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 197 PISVSRLARHMKKPTREGLMPW*W 268
           PI+++RL +H++ P+   + P  W
Sbjct: 314 PIALNRLLKHLESPSSSSVNPLVW 337


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -1

Query: 417 ASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGIKPSR 241
           +S ST S  + S + SSSS+ A +S   +  SSH+       S        YH    SR
Sbjct: 374 SSSSTSSSTLTSSS-SSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSR 431


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -3

Query: 352 VHELFR*HEEQPPSSSVSCTVSRHL*LSPLPRHQTLTSWLL 230
           VH+ +  + E+P  S  +  +  H  ++ L  ++ LT W++
Sbjct: 26  VHQFYWTYTEEPHKSRRAAILKAHPEIASLNGYEPLTKWIV 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,401
Number of Sequences: 5004
Number of extensions: 37014
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)