Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0644.Seq
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 81 5e-16
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 79 3e-15
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 79 3e-15
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 31 0.38
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 3.5
07_01_0755 - 5806614-5806939,5807039-5809415 28 3.5
04_01_0249 - 3284107-3286377 28 4.6
03_05_0654 + 26479416-26479605,26480058-26480246,26480674-264809... 28 4.6
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 28 4.6
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 8.1
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 81.0 bits (191), Expect = 5e-16
Identities = 39/57 (68%), Positives = 45/57 (78%)
Frame = +1
Query: 256 AVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
AV+VGTVT+D R+Y++P M VAAL TE ARARI+ AGGE LTFDQLAL AP G T
Sbjct: 87 AVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNT 143
Score = 56.8 bits (131), Expect = 9e-09
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Frame = +2
Query: 20 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 196
MGID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 197 PISVSRLARHM--KKPTREGL 253
P+S+ RL R M K P R +
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAI 81
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 78.6 bits (185), Expect = 3e-15
Identities = 39/57 (68%), Positives = 44/57 (77%)
Frame = +1
Query: 256 AVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
AV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLAL AP G T
Sbjct: 80 AVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENT 136
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 20 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 196
MGID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 197 PISVSRLARHMK 232
P+S+ RLA+ M+
Sbjct: 61 PLSLRRLAKFME 72
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 78.6 bits (185), Expect = 3e-15
Identities = 38/57 (66%), Positives = 44/57 (77%)
Frame = +1
Query: 256 AVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
AV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE LTFDQLAL AP G T
Sbjct: 79 AVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNT 135
Score = 57.6 bits (133), Expect = 5e-09
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 20 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 196
MGID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 197 PISVSRLARHMK 232
P+S+ RL R M+
Sbjct: 61 PLSLRRLVRFME 72
>09_04_0365 - 16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 31.5 bits (68), Expect = 0.38
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 324 SSHRHLRYLVQSHVICDCPHYHGIKPSRVGFFMWRAKRDTEIG 196
+S L ++ + C +H +PS+V FFMW A+R+ G
Sbjct: 875 ASAYELFFMANTEARCGSLIWHTREPSKVKFFMWLAEREVSHG 917
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 366 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 268
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -1
Query: 351 CTSFFGNMKS-SHRHLRYLVQSHVICDCPHYHGIKPSRVGFFMWRAKRDTEIGGRL 187
C +G+ HR + Y V V+ C + V FMWR +++ E ++
Sbjct: 525 CGPIYGSSYGMDHRKISYRVALAVVGSCVLIFSVVSLVVALFMWRERQEKEAEAKM 580
>04_01_0249 - 3284107-3286377
Length = 756
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 158 VLRRLFMSRINRPPISVSRLARHMKKPTREGLMPW*WGQSQMT*DCTRY 304
++RRL +S +N + R+ + KKPTR + GQ + +CTRY
Sbjct: 359 LIRRLIVSDLN-----LFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402
>03_05_0654 +
26479416-26479605,26480058-26480246,26480674-26480989,
26481286-26481844
Length = 417
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 287 TSFVTVPTTTASNPHELASSCGAPNETQ 204
++ +TVP+T S+P + SC APN Q
Sbjct: 339 SNVMTVPSTFYSSPEDPRVSCHAPNMAQ 366
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 262 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALS 405
++G++ DV I + VAA+ V + R + GG +L Q+A++
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAMA 374
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 160 STPALYEPYQPATNLCV-SFGAPHEEANS 243
S PA ++ Y+P+TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,863
Number of Sequences: 37544
Number of extensions: 267415
Number of successful extensions: 652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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