Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0644.Seq
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)               75   4e-14
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)               27   6.3  
SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)                   27   8.3  
SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)                 27   8.3  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 34/56 (60%), Positives = 44/56 (78%)
 Frame = +1

Query: 259 VVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           VVVG++T+D R++++P + + AL  +E ARARIL AGGEILTFDQLAL AP G  T
Sbjct: 188 VVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNT 243



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 34/70 (48%), Positives = 42/70 (60%)
 Frame = +2

Query: 23  GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 202
           GIDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+
Sbjct: 109 GIDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPL 168

Query: 203 SVSRLARHMK 232
           S++RL R MK
Sbjct: 169 SLARLVRKMK 178


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 411 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 301
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
          Length = 527

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 289 SRHL*LSPLPRHQTLTSWLLH--VARQTRHRDWWPVDTAH 176
           SRH+ ++   RH T+TS   H  +  ++RH D   V T H
Sbjct: 353 SRHVTITSRSRHVTITSRSRHGTIISRSRHHDNITVTTCH 392



 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 289 SRHL*LSPLPRHQTLTSWLLHVARQTRHR 203
           SRH+ ++   RH T+TS L HV   +R R
Sbjct: 290 SRHVTITSRSRHVTITSRLRHVTITSRSR 318


>SB_15990| Best HMM Match : zf-CCCH (HMM E-Value=4.1)
          Length = 236

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 55  SSAHRS*ISRYLLEVTCKALQILGQT 132
           ++ HR  ++RY+   TC  L + G T
Sbjct: 84  ATCHRQHVTRYMSHATCHTLHVTGNT 109


>SB_18611| Best HMM Match : IBN_N (HMM E-Value=7.4e-06)
          Length = 421

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 331 HEEQPPSSSVSCTVSRHL*LSPLPRHQTLTSWLLHVARQTRH 206
           H +  PSSS +   S H  ++P   H  + SW   VA  + H
Sbjct: 298 HHQVMPSSSHTIIKSHHHQVTPSSSHTIIKSWHHQVAPLSSH 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,330
Number of Sequences: 59808
Number of extensions: 290964
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)