Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0644.Seq
         (489 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18 pro...    89   1e-17
BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18 p...    89   1e-17
BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18 p...    89   1e-17
AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18 p...    89   1e-17
BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18 p...    87   4e-17
DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18 p...    79   6e-15

>L11566-1|AAA16329.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 88.6 bits (210), Expect = 1e-17
 Identities = 43/76 (56%), Positives = 50/76 (65%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MG+DI H  DRKVRR E KSQDI               TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 200 ISVSRLARHMKKPTRE 247
           +S+SR+ R MK P RE
Sbjct: 61  LSLSRMIRKMKLPGRE 76



 Score = 79.4 bits (187), Expect = 6e-15
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +1

Query: 256 AVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G  T
Sbjct: 80  AVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGT 136


>BC009708-1|AAH09708.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 88.6 bits (210), Expect = 1e-17
 Identities = 43/76 (56%), Positives = 50/76 (65%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MG+DI H  DRKVRR E KSQDI               TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 200 ISVSRLARHMKKPTRE 247
           +S+SR+ R MK P RE
Sbjct: 61  LSLSRMIRKMKLPGRE 76



 Score = 79.4 bits (187), Expect = 6e-15
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +1

Query: 256 AVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G  T
Sbjct: 80  AVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGT 136


>BC000374-1|AAH00374.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 88.6 bits (210), Expect = 1e-17
 Identities = 43/76 (56%), Positives = 50/76 (65%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MG+DI H  DRKVRR E KSQDI               TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 200 ISVSRLARHMKKPTRE 247
           +S+SR+ R MK P RE
Sbjct: 61  LSLSRMIRKMKLPGRE 76



 Score = 79.4 bits (187), Expect = 6e-15
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +1

Query: 256 AVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G  T
Sbjct: 80  AVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGT 136


>AB061825-1|BAB79463.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 88.6 bits (210), Expect = 1e-17
 Identities = 43/76 (56%), Positives = 50/76 (65%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MG+DI H  DRKVRR E KSQDI               TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 200 ISVSRLARHMKKPTRE 247
           +S+SR+ R MK P RE
Sbjct: 61  LSLSRMIRKMKLPGRE 76



 Score = 79.4 bits (187), Expect = 6e-15
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +1

Query: 256 AVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G  T
Sbjct: 80  AVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGT 136


>BC021743-1|AAH21743.1|  188|Homo sapiens ribosomal protein L18
           protein.
          Length = 188

 Score = 86.6 bits (205), Expect = 4e-17
 Identities = 42/76 (55%), Positives = 49/76 (64%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MG+DI H  DRKVRR E KSQDI               TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1   MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60

Query: 200 ISVSRLARHMKKPTRE 247
           + +SR+ R MK P RE
Sbjct: 61  LCLSRMIRKMKLPGRE 76



 Score = 79.4 bits (187), Expect = 6e-15
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +1

Query: 256 AVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G  T
Sbjct: 80  AVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGT 136


>DQ403032-1|ABD77165.1|  164|Homo sapiens ribosomal protein L18
           protein.
          Length = 164

 Score = 79.4 bits (187), Expect = 6e-15
 Identities = 37/57 (64%), Positives = 47/57 (82%)
 Frame = +1

Query: 256 AVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G  T
Sbjct: 57  AVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGT 113



 Score = 59.7 bits (138), Expect = 5e-09
 Identities = 26/38 (68%), Positives = 32/38 (84%)
 Frame = +2

Query: 134 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTRE 247
           TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE
Sbjct: 16  TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRE 53


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,945,840
Number of Sequences: 237096
Number of extensions: 1431465
Number of successful extensions: 2815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2815
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)