Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0644.Seq
         (489 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT030448-1|ABP87890.1|  188|Drosophila melanogaster IP16807p pro...    91   1e-18
AY113554-1|AAM29559.1|  188|Drosophila melanogaster RH01814p pro...    91   1e-18
AE014296-1212|AAF50596.1|  188|Drosophila melanogaster CG8615-PA...    91   1e-18
AY061165-1|AAL28713.1|  493|Drosophila melanogaster LD13176p pro...    32   0.37 
AE014296-2650|AAF49528.3|  493|Drosophila melanogaster CG5151-PA...    32   0.37 
AE014296-2649|AAS64987.1|  695|Drosophila melanogaster CG5151-PB...    32   0.37 

>BT030448-1|ABP87890.1|  188|Drosophila melanogaster IP16807p
           protein.
          Length = 188

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 42/71 (59%), Positives = 51/71 (71%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MGIDINHK+DRKVRRTE KSQD+               TN KFN+I+L+RLFMS+INRPP
Sbjct: 1   MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPP 60

Query: 200 ISVSRLARHMK 232
           +S+ R+AR  K
Sbjct: 61  LSLQRIARFFK 71



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 40/56 (71%), Positives = 46/56 (82%)
 Frame = +1

Query: 259 VVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           VVVGTVT+D RL  +PK+TV ALHVT+ AR RIL AGGE+LTFDQLAL +PTG  T
Sbjct: 81  VVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNT 136


>AY113554-1|AAM29559.1|  188|Drosophila melanogaster RH01814p
           protein.
          Length = 188

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 42/71 (59%), Positives = 51/71 (71%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MGIDINHK+DRKVRRTE KSQD+               TN KFN+I+L+RLFMS+INRPP
Sbjct: 1   MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPP 60

Query: 200 ISVSRLARHMK 232
           +S+ R+AR  K
Sbjct: 61  LSLQRIARFFK 71



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 40/56 (71%), Positives = 46/56 (82%)
 Frame = +1

Query: 259 VVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           VVVGTVT+D RL  +PK+TV ALHVT+ AR RIL AGGE+LTFDQLAL +PTG  T
Sbjct: 81  VVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNT 136


>AE014296-1212|AAF50596.1|  188|Drosophila melanogaster CG8615-PA
           protein.
          Length = 188

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 42/71 (59%), Positives = 51/71 (71%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MGIDINHK+DRKVRRTE KSQD+               TN KFN+I+L+RLFMS+INRPP
Sbjct: 1   MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPP 60

Query: 200 ISVSRLARHMK 232
           +S+ R+AR  K
Sbjct: 61  LSLQRIARFFK 71



 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 40/56 (71%), Positives = 46/56 (82%)
 Frame = +1

Query: 259 VVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           VVVGTVT+D RL  +PK+TV ALHVT+ AR RIL AGGE+LTFDQLAL +PTG  T
Sbjct: 81  VVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNT 136


>AY061165-1|AAL28713.1|  493|Drosophila melanogaster LD13176p
           protein.
          Length = 493

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 372 SSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGIKPSRVG 235
           +SS+ ++C+S   +    H+H +Y +Q      CPH+  +  S  G
Sbjct: 169 NSSTGSSCSSLQSHSNDHHQHYQYQLQQQQTPRCPHHVPLPDSEYG 214


>AE014296-2650|AAF49528.3|  493|Drosophila melanogaster CG5151-PA,
           isoform A protein.
          Length = 493

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 372 SSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGIKPSRVG 235
           +SS+ ++C+S   +    H+H +Y +Q      CPH+  +  S  G
Sbjct: 169 NSSTGSSCSSLQSHSNDHHQHYQYQLQQQQTPRCPHHVPLPDSEYG 214


>AE014296-2649|AAS64987.1|  695|Drosophila melanogaster CG5151-PB,
           isoform B protein.
          Length = 695

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 372 SSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGIKPSRVG 235
           +SS+ ++C+S   +    H+H +Y +Q      CPH+  +  S  G
Sbjct: 371 NSSTGSSCSSLQSHSNDHHQHYQYQLQQQQTPRCPHHVPLPDSEYG 416


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,506,416
Number of Sequences: 53049
Number of extensions: 448766
Number of successful extensions: 1114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)