Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0644.Seq
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...    83   1e-16
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    31   0.45 
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    31   0.45 
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical...    27   5.5  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 39/56 (69%), Positives = 46/56 (82%)
 Frame = +1

Query: 259 VVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALSAPTGXKT 426
           V + TVT+D RLY +PK++VAALHVTE ARARILAAGGEI+T DQLAL +P G  T
Sbjct: 81  VTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENT 136



 Score = 70.5 bits (165), Expect = 6e-13
 Identities = 37/76 (48%), Positives = 46/76 (60%)
 Frame = +2

Query: 20  MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 199
           MGIDINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P
Sbjct: 1   MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60

Query: 200 ISVSRLARHMKKPTRE 247
           +S+++LAR ++K   E
Sbjct: 61  LSLAKLARAVQKAGNE 76


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 145 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDAVVVGTV-TNDVRLY 297
           + +D S+P+ ++P   +TN   S+  P  E++  G D+  VGTV ++  R Y
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDS-TVGTVDSSQFRAY 166


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 145 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDAVVVGTV-TNDVRLY 297
           + +D S+P+ ++P   +TN   S+  P  E++  G D+  VGTV ++  R Y
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDS-TVGTVDSSQFRAY 250


>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
            protein B0511.12 protein.
          Length = 1634

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 287  TSFVTVPTTTASNPHEL---ASSCGAPNETQRLVA 192
            TS   +PTTTASNP E    +S+   P ET  L A
Sbjct: 1598 TSSSALPTTTASNPLETTGNSSTDSVPLETSELPA 1632


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,785
Number of Sequences: 27780
Number of extensions: 219016
Number of successful extensions: 558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)