Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0644.Seq
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.081
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          26   0.25 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 0.081
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 79  SRYLLEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPA 195
           S Y +  T    Q   QT + Q+  DR++P  Y  Y PA
Sbjct: 394 SLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPA 432


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 308 FGILYSLTSFVTVPTTTAS 252
           FG +Y L ++  VPTTTAS
Sbjct: 367 FGSIYFLGNYSLVPTTTAS 385


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 219 AKRDTEIGGRLIRLIKSRRRTI 154
           AK+ T IGG+ + ++KS  +++
Sbjct: 889 AKKATNIGGKPVAVVKSSAQSL 910


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 309 DDGGCSSCYRKSSCTHFGCWRRNSY 383
           +DGGCSS    S+  +   +++N Y
Sbjct: 924 NDGGCSSLVDVSTPVNKKVYKQNDY 948


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 323 AATVIFGILYSLTSFVTVPT 264
           ++ VIFG+L+ L SF+   T
Sbjct: 14  SSCVIFGVLFVLFSFLRTRT 33


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 323 AATVIFGILYSLTSFVTVPT 264
           ++ VIFG+L+ L SF+   T
Sbjct: 14  SSCVIFGVLFVLFSFLRTRT 33


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 274  VTNDVRLYKIPKMTVAALHVTEKARARILAAGGEIL 381
            VT   R+ +     VAA   T +  ARI + GG ++
Sbjct: 1289 VTGSTRVGEGQSSKVAAQVPTNRVPARITSFGGHVV 1324


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 274  VTNDVRLYKIPKMTVAALHVTEKARARILAAGGEIL 381
            VT   R+ +     VAA   T +  ARI + GG ++
Sbjct: 1285 VTGSTRVGEGQSSKVAAQVPTNRVPARITSFGGHVV 1320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,592
Number of Sequences: 438
Number of extensions: 2388
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)