Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0643.Seq
         (568 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5V8A4 Cluster: SED1-1; n=2; Saccharomyces|Rep: SED1-1 ...    31   1.1  
UniRef50_Q4RST2 Cluster: Chromosome 12 SCAF14999, whole genome s...    33   3.5  

>UniRef50_Q5V8A4 Cluster: SED1-1; n=2; Saccharomyces|Rep: SED1-1 -
           Saccharomyces bayanus (Yeast) (Saccharomyces uvarum)
          Length = 264

 Score = 31.1 bits (67), Expect(2) = 1.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 422 TSLGPVIQSE*VKYDPTPTHTGDFDFIIYYRRYC 321
           +SLGP   +    YDP+ ++T DF  +  Y  YC
Sbjct: 92  SSLGPSNTTSTPPYDPSTSYTTDFTVVTEYTTYC 125



 Score = 23.0 bits (47), Expect(2) = 1.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 323 CHCTIELILETRVSRLSRVAAFTC*CP 243
           C CTIE    T  +  + V  +T  CP
Sbjct: 151 CPCTIEKPTTTSTTEYTVVTEYTTYCP 177


>UniRef50_Q4RST2 Cluster: Chromosome 12 SCAF14999, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 12
           SCAF14999, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 832

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +3

Query: 42  NDIQYF*AKMFVYKIVFLNALSTYLK-VLFSQLQLKNLIVVKNWY 173
           +  QYF     V+K++F  + S++LK VLFS + L  L VV NWY
Sbjct: 657 DQFQYFLFSS-VHKLIFPFSGSSFLKHVLFSAVTLFELTVVNNWY 700


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,200,565
Number of Sequences: 1657284
Number of extensions: 10426137
Number of successful extensions: 19290
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19287
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)