Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0643.Seq
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285           31   0.48 
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860     29   2.0  
05_01_0428 - 3379116-3379262,3379357-3379537,3379690-3379785,337...    29   2.6  
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147...    28   6.0  
11_06_0220 - 21374816-21376849                                         27   7.9  

>01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285
          Length = 321

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +3

Query: 93  LNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASALMALSVLSVYQSPRT 248
           ++  ST +++LFSQ+ + N  + K +  + SH VASA++    + +Y +  T
Sbjct: 209 IHVSSTSIQILFSQIAIANGQLEKFYQPRSSHHVASAIVHGEKIPLYGAGET 260


>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
          Length = 335

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +1

Query: 460 IWYRNWTKSVCICTELSVTDNRYSGTPRSGR 552
           +W+RN  + + I ++++V ++ Y+G P S R
Sbjct: 178 MWFRNPLRHIAITSDIAVANDYYNGDPESLR 208


>05_01_0428 -
           3379116-3379262,3379357-3379537,3379690-3379785,
           3379886-3380034,3380120-3380392,3380895-3380983,
           3381923-3382015,3382143-3382238,3382370-3382477,
           3382917-3383208
          Length = 507

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +1

Query: 28  QYNKITIYNIFKQKCL 75
           QYN+I IYNI+  KCL
Sbjct: 284 QYNQIDIYNIYAPKCL 299


>10_08_0959 -
           21813756-21814097,21814462-21814570,21814688-21814740,
           21814849-21815049,21815320-21815433,21815513-21815671,
           21816490-21816849,21816928-21817149,21817967-21818093,
           21818887-21819023,21819169-21819292,21819665-21820174,
           21820255-21820436,21820812-21820862,21821114-21821266,
           21821339-21821437,21821519-21821861,21821957-21822030,
           21822105-21823025,21823133-21823257,21823419-21823461,
           21823574-21823762,21824814-21825074,21825228-21825387,
           21826200-21826363,21826523-21827009,21827090-21827431,
           21827519-21827836,21828001-21828041,21828136-21828388,
           21829158-21829261,21830198-21830386,21830543-21831196,
           21831320-21831610,21831739-21831882,21832107-21832205,
           21832549-21832657,21832739-21832923,21833008-21833121,
           21833270-21833401,21833483-21833815,21833945-21834436,
           21834773-21834847,21834917-21835066,21835143-21835241,
           21835463-21835547,21837188-21837375,21837513-21837647,
           21837729-21837849,21838127-21838194,21838275-21838370,
           21838450-21838554,21838665-21838980,21839053-21839142,
           21840011-21840181,21840850-21841010,21841088-21841270,
           21841839-21841940,21842515-21842632,21842704-21842798,
           21842972-21843022,21843107-21843241,21843333-21843436,
           21844249-21844414,21844649-21844773,21845220-21845316
          Length = 4181

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 87  VFLNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASALMALSVLSVY 233
           V ++A   +++VLF   +  +L  V   YK  +  VA+ +  L  LSV+
Sbjct: 56  VLVSAPQQFIQVLFGDCESTHLDAVTRHYKSIALRVATVIQNLGNLSVW 104


>11_06_0220 - 21374816-21376849
          Length = 677

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 557 NGRPDLGVPLYRLSVTDSSVQIQTDLV 477
           NGRPD  + L+R  VT+S+V +   ++
Sbjct: 300 NGRPDSALKLFRWMVTNSTVLVTRSIL 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,445
Number of Sequences: 37544
Number of extensions: 263363
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)