Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0643.Seq
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)              29   2.0  
SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             28   4.6  
SB_14324| Best HMM Match : Ank (HMM E-Value=1.7e-28)                   28   4.6  

>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 63   AKMFVYKIVFLNALSTYLKVLFSQLQLKNLIVVKN 167
            AK F Y+I F +ALS + K L ++L   +L+ V++
Sbjct: 4763 AKAFCYEIFFKSALSDHCKSLHAELDFYSLVCVED 4797


>SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)
          Length = 960

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +3

Query: 90  FLNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASALMALSVLSVYQSPRTLTCKCRH 269
           F NA STY++ ++  ++  N+   K   +K         ++  +  VY+S   L C+ + 
Sbjct: 700 FANAESTYMRGMWYHMRKHNVETSKEGVRKVKSGELDVFISDHISLVYESLNDLDCELKV 759

Query: 270 TRQP 281
             +P
Sbjct: 760 VGEP 763


>SB_33922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +3

Query: 24  TPVQQNNDIQYF*AKMFVYKIVFLNALSTYLKVLFSQLQLKNLIVVKNWYKKYSHSVASA 203
           TP    +D QYF +K+  Y  V +  ++  L  L   L+   +   + +Y   S S+A A
Sbjct: 12  TPTVTPSDRQYFLSKVISYAAVSVLIIAGNLLCLVVFLRTPQMRRKRAYYLLISLSIADA 71

Query: 204 LMALSVL 224
           L+ +S++
Sbjct: 72  LVGISLV 78


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 359 GDFDFIIYYRRYCHCTIELILETRVSRL 276
           GD+ F+  YR +C+C  +  +E R +RL
Sbjct: 762 GDYQFMQCYREHCYCVNQDGVEVRGTRL 789


>SB_14324| Best HMM Match : Ank (HMM E-Value=1.7e-28)
          Length = 631

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 126 FSQLQLKNLIVVKNWYKKYSHSVASALMALSVLSVYQSPRTLTCKCRHTRQP*DTSFKYQ 305
           FS+ +  N I  +   +KY      A +  +V    +SPR    K +  R     SFK+ 
Sbjct: 303 FSEPRFVNRIYRRTGKRKYKEDNRFATLNDTVEDYVESPRNKNTKGKTERDDAFKSFKWS 362

Query: 306 FYST--MAVTSIVYNEIEVSSV 365
           F  T  M V  + Y    V S+
Sbjct: 363 FLKTFMMMVNGMDYQTTIVDSL 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,396
Number of Sequences: 59808
Number of extensions: 329989
Number of successful extensions: 542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)