Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0643.Seq
         (568 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   3.0  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   3.0  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 99  RLKTLFYKQTFLLKNIVYRYFVVLGFIL 16
           R KTLFY    +L  ++  +  VL F L
Sbjct: 229 RRKTLFYTVNLILPTVLISFLCVLVFYL 256



 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 383 YDPTPTHTGDFDFIIYYRRYCHCTIELILET 291
           Y+  PT T    +II  R+    T+ LIL T
Sbjct: 213 YEGNPTETDITFYIIIRRKTLFYTVNLILPT 243


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 380  DPTPTHTGDFDFIIYY 333
            +P P  TG  DF++YY
Sbjct: 977  EPLPDGTGTGDFLVYY 992


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 578,187
Number of Sequences: 2352
Number of extensions: 11270
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53404389
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)