Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0643.Seq
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   0.93 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   4.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   4.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 99  RLKTLFYKQTFLLKNIVYRYFVVLGFIL 16
           R KTLFY    +L  ++  +  VL F L
Sbjct: 230 RRKTLFYTVNLILPTVLISFLCVLVFYL 257


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 147 NLIVVKNWYKKYSHSVASALMALSVLSVYQSPRTLT 254
           N  ++     + ++++A+  M   +L++ +SPRTLT
Sbjct: 464 NQFILMTTVNEGNNNMAATYMNECLLNIQKSPRTLT 499


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 99  RLKTLFYKQTFLLKNIVYRYFVVLGFIL 16
           R KTLFY    ++  +   Y  VL F L
Sbjct: 232 RRKTLFYTVNLIVPCVSISYLSVLAFYL 259


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 81  YKQTFLLKNIVYRYFV 34
           YK+ F+  NI+ +YF+
Sbjct: 108 YKKVFMKDNILRQYFI 123


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 81  YKQTFLLKNIVYRYFV 34
           YK+ F+  NI+ +YF+
Sbjct: 91  YKKVFMKDNILRQYFI 106


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 378 PHPYAHWRLRFHYIL*TLLPL 316
           P+P  H+ L   YIL T L L
Sbjct: 43  PNPSLHYLLALLYILFTFLAL 63


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 99  RLKTLFYKQTFLLKNIVYRYFVVLGFIL 16
           R KTLFY    ++  +   +  VL F L
Sbjct: 246 RRKTLFYTVNLIIPCVGITFLTVLVFYL 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,563
Number of Sequences: 438
Number of extensions: 3398
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)