Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0643.Seq
         (568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19410.1 68417.m02856 pectinacetylesterase, putative similar ...    27   6.6  
At3g48620.1 68416.m05308 chloroplast outer membrane protein-rela...    27   8.7  

>At4g19410.1 68417.m02856 pectinacetylesterase, putative similar to
           pectinacetylesterase precursor GI:1431629 from [Vigna
           radiata]
          Length = 391

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 346 KSKSPVCVGVGSYFTHSL*ITGPNEVSVYYKK 441
           ++ S  CV    YF H   ITG + +  YY K
Sbjct: 190 RTASVKCVSDAGYFIHGKDITGGSYIQSYYSK 221


>At3g48620.1 68416.m05308 chloroplast outer membrane protein-related
           weak similarity to chloroplastic outer envelope membrane
           protein (OEP75) [Pisum sativum] GI:633607
          Length = 328

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 484 SVCICTELSVTDNRYSGTPRSGR 552
           S C+C  L++TD RY    RSGR
Sbjct: 37  STCMCVRLTMTDGRYQ---RSGR 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,859
Number of Sequences: 28952
Number of extensions: 226439
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)