Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0642.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    89   5e-19
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    89   5e-19
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    89   5e-19
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    42   7e-05
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    32   0.055
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   4.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.3  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   8.4  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 88.6 bits (210), Expect = 5e-19
 Identities = 46/78 (58%), Positives = 54/78 (69%)
 Frame = -2

Query: 483 EXVDRRYW*IYXKSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAV 304
           E +DRR      +S PK +KSGDA I  +V  KP+CVE+F ++ PLGRFAVRDMRQTVAV
Sbjct: 375 EKIDRRSGKKIEES-PKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAV 433

Query: 303 GVIKAVNFKEAGGGKVIK 250
           GVIKAV     G  KV K
Sbjct: 434 GVIKAVEKVAPGAAKVTK 451


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 88.6 bits (210), Expect = 5e-19
 Identities = 46/78 (58%), Positives = 54/78 (69%)
 Frame = -2

Query: 483 EXVDRRYW*IYXKSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAV 304
           E +DRR      +S PK +KSGDA I  +V  KP+CVE+F ++ PLGRFAVRDMRQTVAV
Sbjct: 375 EKIDRRSGKKIEES-PKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAV 433

Query: 303 GVIKAVNFKEAGGGKVIK 250
           GVIKAV     G  KV K
Sbjct: 434 GVIKAVEKVAPGAAKVTK 451


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 88.6 bits (210), Expect = 5e-19
 Identities = 46/78 (58%), Positives = 54/78 (69%)
 Frame = -2

Query: 483 EXVDRRYW*IYXKSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAV 304
           E +DRR      +S PK +KSGDA I  +V  KP+CVE+F ++ PLGRFAVRDMRQTVAV
Sbjct: 375 EKIDRRSGKKIEES-PKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAV 433

Query: 303 GVIKAVNFKEAGGGKVIK 250
           GVIKAV     G  KV K
Sbjct: 434 GVIKAVEKVAPGAAKVTK 451


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 41.5 bits (93), Expect = 7e-05
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -2

Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 283
           K  P     G   I  L    P+C+E F+++  +GRF +RD   TVAVG V+K ++
Sbjct: 607 KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 31.9 bits (69), Expect = 0.055
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 384 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 292
           PLC+   +E P LGRF +R    TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 254 MTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 376
           + L P +S  +    TP+AT    S+  + P GG    D+T
Sbjct: 244 LNLKPRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT 284


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -3

Query: 161 GVSKEKRATNSFLFYIFYKACNVTLFYNLYKV 66
           G S E     S+   IFY       FYNL KV
Sbjct: 762 GASSEMECYFSYCSLIFYYQATTLQFYNLPKV 793


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 227 QEVARAVNSTIFHTTAILHSPKGVSKEKRATNSFL 123
           + +A A+N +I  TT +    K +  E+ ++ SFL
Sbjct: 369 EALAYAINPSILPTTLLTSYQKSIQDEENSSVSFL 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,328
Number of Sequences: 5004
Number of extensions: 30946
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)