Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0642.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 87 6e-18
03_01_0547 + 4093196-4093657,4094267-4095148 87 6e-18
03_01_0544 + 4082528-4082989,4083585-4084466 87 6e-18
03_01_0543 + 4076981-4077442,4078145-4079026 87 6e-18
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 42 2e-04
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 42 2e-04
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 42 4e-04
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 38 0.004
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 2.7
06_01_1171 - 10007714-10009141 28 4.8
06_03_0570 - 22363197-22363588,22363755-22366782 27 6.3
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 6.3
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 87.4 bits (207), Expect = 6e-18
Identities = 40/66 (60%), Positives = 50/66 (75%)
Frame = -2
Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAG 268
+ PK +K+GDA +V ++ KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+
Sbjct: 376 EKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPT 435
Query: 267 GGKVIK 250
G KV K
Sbjct: 436 GAKVTK 441
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 87.4 bits (207), Expect = 6e-18
Identities = 40/66 (60%), Positives = 50/66 (75%)
Frame = -2
Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAG 268
+ PK +K+GDA +V ++ KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+
Sbjct: 376 EKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPT 435
Query: 267 GGKVIK 250
G KV K
Sbjct: 436 GAKVTK 441
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 87.4 bits (207), Expect = 6e-18
Identities = 40/66 (60%), Positives = 50/66 (75%)
Frame = -2
Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAG 268
+ PK +K+GDA +V ++ KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+
Sbjct: 376 EKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPT 435
Query: 267 GGKVIK 250
G KV K
Sbjct: 436 GAKVTK 441
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 87.4 bits (207), Expect = 6e-18
Identities = 40/66 (60%), Positives = 50/66 (75%)
Frame = -2
Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAG 268
+ PK +K+GDA +V ++ KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V K+
Sbjct: 376 EKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPT 435
Query: 267 GGKVIK 250
G KV K
Sbjct: 436 GAKVTK 441
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = -2
Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 295
K+ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 621 KTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = -2
Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 295
K+ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 621 KTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 286
K P+ + S A++ + K +CVE F LGR +R T+AVG++ V
Sbjct: 597 KKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 37.9 bits (84), Expect = 0.004
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVR 328
K P +K+G + + +C+E+F +FP LGRF +R
Sbjct: 376 KRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 77 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 157
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>06_01_1171 - 10007714-10009141
Length = 475
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 242 FGSFMTLPPPASLKLTALMTPTATVCL-MSRTAKRPRG 352
FGS M LPPP + L A + + T + + TA P G
Sbjct: 288 FGSMMALPPPHAASLAAALERSKTPFVWAASTATLPEG 325
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 248 SFMTLPPPASLKLTALMTPT-----ATVCLMSRTAKRPRGGNSWKDS 373
+F+TLP SL TAL + A +CL SR + R SW +S
Sbjct: 19 AFLTLPLIPSLSSTALDDESNKDLQALLCLKSRLSNNARSLASWNES 65
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 293 LMTPTATVCLMSRTAKRPRGGNSWKDST 376
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,282,089
Number of Sequences: 37544
Number of extensions: 199297
Number of successful extensions: 484
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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