Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0642.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                101   4e-22
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            37   0.008
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           37   0.008
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)                    29   2.1  
SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)                    28   4.9  
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)                   27   6.5  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  101 bits (241), Expect = 4e-22
 Identities = 49/78 (62%), Positives = 60/78 (76%)
 Frame = -2

Query: 483 EXVDRRYW*IYXKSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAV 304
           E +DRR      + NPK IK+GDAA+V ++  KP+CVE+F EFPPLGRFAVRDM+QTVAV
Sbjct: 236 EKIDRRSG-KKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQTVAV 294

Query: 303 GVIKAVNFKEAGGGKVIK 250
           GVIK+V+  EA GGK  K
Sbjct: 295 GVIKSVDKTEAAGGKTTK 312


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -2

Query: 411 AIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 295
           A V L   +P+CVE ++++  LGRF +R    T+A GVI
Sbjct: 40  AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRD 325
           ++ P+ IK    AI  L     +C+E F +F  +GRF +RD
Sbjct: 505 QTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545


>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 47  FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 187
           +QI+Y+  Y   KI +H++  K  RK + L  FFPS  H +    +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355


>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
          Length = 495

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 284 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 382
           LT+L  PT    L  RT  +PR G  W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441


>SB_22316| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 3404

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 394  TXQASMCRVLPGIPTPRSFCCP*HEADS 311
            T +    R LPGI  P   CC  H  DS
Sbjct: 2446 TEETEEMRTLPGIANPEGPCCVNHTMDS 2473


>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
          Length = 461

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 209 VNSTIFHTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNLYKVIHNISE 48
           V++ +    A++  P  V K+KR   SFL    Y    V +F ++ +V+H ++E
Sbjct: 3   VSTDLAKLEAVISWP--VPKKKRELQSFLGLCTYYRKYVKMFADIARVLHRLTE 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,034,087
Number of Sequences: 59808
Number of extensions: 225186
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)