Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0642.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...    92   2e-19
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...    92   2e-19
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...    92   2e-19
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    47   9e-06
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    35   0.038
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    35   0.038
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   1.9  
AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical ...    27   5.7  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    27   7.6  
AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical...    27   10.0 

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 48/78 (61%), Positives = 55/78 (70%)
 Frame = -2

Query: 483 EXVDRRYW*IYXKSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAV 304
           E VDRR      +  PK +KSGDA IV L+  KPLCVESF ++ PLGRFAVRDMRQTVAV
Sbjct: 343 EKVDRRTG-KKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAV 401

Query: 303 GVIKAVNFKEAGGGKVIK 250
           GVIK+V   +   GKV K
Sbjct: 402 GVIKSVEKSDGSSGKVTK 419


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 48/78 (61%), Positives = 55/78 (70%)
 Frame = -2

Query: 483 EXVDRRYW*IYXKSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAV 304
           E VDRR      +  PK +KSGDA IV L+  KPLCVESF ++ PLGRFAVRDMRQTVAV
Sbjct: 377 EKVDRRTG-KKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAV 435

Query: 303 GVIKAVNFKEAGGGKVIK 250
           GVIK+V   +   GKV K
Sbjct: 436 GVIKSVEKSDGSSGKVTK 453


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 48/78 (61%), Positives = 55/78 (70%)
 Frame = -2

Query: 483 EXVDRRYW*IYXKSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAV 304
           E VDRR      +  PK +KSGDA IV L+  KPLCVESF ++ PLGRFAVRDMRQTVAV
Sbjct: 377 EKVDRRTG-KKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAV 435

Query: 303 GVIKAVNFKEAGGGKVIK 250
           GVIK+V   +   GKV K
Sbjct: 436 GVIKSVEKSDGSSGKVTK 453


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = -2

Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 286
           K   K +K  +  I+ L   +P  +E F+E+P LGRF +RD  +T+A+G V+K V
Sbjct: 477 KKRAKFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 286
           K  P+ I  G +A+V +     + +E+F     LGR   R    T+A G+++ V
Sbjct: 535 KKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 34.7 bits (76), Expect = 0.038
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 286
           K  P+ I  G +A+V +     + +E+F     LGR   R    T+A G+++ V
Sbjct: 553 KKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 146 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 39
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


>AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical
           protein M04G7.1 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 284 LTALMTP-TATVCLMSRTAKRPRGGNSWKDSTHRGLXXTKLTMAA 415
           + AL  P T ++CL +   K P  GN+  D T RG   +  +++A
Sbjct: 174 MMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTRGNYCSATSVSA 218


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 191 HTTAILHSPKGVSKEKRATNSFLFYIFYKACNVTLFYNL 75
           H TA L S K V+  K+    F+ +  ++ C+  LF+ L
Sbjct: 107 HITAELSSKKEVTFTKKGKEDFIVHDRHEKCSAILFHAL 145


>AC024791-32|AAY55887.1|  212|Caenorhabditis elegans Hypothetical
           protein Y47G6A.31 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 86  FYNLYKVIHNISETFCYDC 30
           F +L K++ N   TFCY C
Sbjct: 44  FQHLPKLLENCGHTFCYSC 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,825,212
Number of Sequences: 27780
Number of extensions: 177152
Number of successful extensions: 448
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)