Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0642.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   107   6e-26
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   103   1e-24
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    31   0.007
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   0.77 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   0.77 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   0.77 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.3  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   9.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  107 bits (257), Expect = 6e-26
 Identities = 53/66 (80%), Positives = 57/66 (86%)
 Frame = -2

Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAG 268
           + NPKSIKSGDAAIV LV  KP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV FK+A 
Sbjct: 388 EENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTFKDA- 446

Query: 267 GGKVIK 250
            GKV K
Sbjct: 447 AGKVTK 452


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  103 bits (246), Expect = 1e-24
 Identities = 51/66 (77%), Positives = 56/66 (84%)
 Frame = -2

Query: 447 KSNPKSIKSGDAAIVNLVXXKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAG 268
           + NPKSIKSGDAAIV L   KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V FK+  
Sbjct: 388 EENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKDT- 446

Query: 267 GGKVIK 250
            GKV K
Sbjct: 447 QGKVTK 452


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 31.1 bits (67), Expect = 0.007
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = -2

Query: 447 KSNPKSIKSGDAAIVNLVXXK 385
           + NPKSIKSGDAAIV L   K
Sbjct: 99  EENPKSIKSGDAAIVMLQPTK 119


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 174 KYRSCMKNCAVNSSSYFLPLVAFS 245
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 174 KYRSCMKNCAVNSSSYFLPLVAFS 245
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 174 KYRSCMKNCAVNSSSYFLPLVAFS 245
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 135 CSPFFLRNTFR*MKYRSCMKN 197
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 144 FFLRNTFR*MKYRSCMKN 197
           FF R+  + ++YR C KN
Sbjct: 41  FFRRSIQQKIQYRPCTKN 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,030
Number of Sequences: 438
Number of extensions: 2178
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)