Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0641.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    27   0.071
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   0.50 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.2  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   2.0  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   2.0  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   2.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   3.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   3.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   4.7  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   4.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   4.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   6.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.1  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   8.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   8.1  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   8.1  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   8.1  

>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 27.5 bits (58), Expect = 0.071
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +1

Query: 109 GKLKRRVMPEDVLINCSKDSKIPKPPSG 192
           G+  ++++P+ ++ NCSK S++ K  +G
Sbjct: 70  GRELKKILPDALVTNCSKCSEVQKKQAG 97


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +1

Query: 88  RGEHPKMGKLKRRVMPEDVLINCSKDSKIPKPPSGHKWREVRHDNTVTW 234
           +G  P  G   +RV+PE +  NC+K ++  +  +    + ++ +    W
Sbjct: 50  KGPCPPQGVDLKRVLPEALQTNCAKCTEKQRTAAYRSIKRLKKEYPKIW 98


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 128 LCLKMS*SIAQKIVKYQNHLQDI 196
           LC ++  S+ QK+     HLQDI
Sbjct: 130 LCQELGISVVQKVSHTLYHLQDI 152


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 152 IAQKIVKYQNHLQDI 196
           +  KI++Y NHL D+
Sbjct: 181 VRSKIIEYMNHLVDL 195


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 152 IAQKIVKYQNHLQDI 196
           +  KI++Y NHL D+
Sbjct: 182 VRSKIIEYMNHLVDL 196


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 152 IAQKIVKYQNHLQDI 196
           +  KI++Y NHL D+
Sbjct: 182 VRSKIIEYMNHLVDL 196


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 158 QKIVKYQNHLQDINGEK*D 214
           QK VK+  H+  ING K D
Sbjct: 498 QKEVKFLGHILTINGIKAD 516


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 99  VLAPTSKQPWGFYSEVPYLLFMTIYCAKSI 10
           + APT   P         LLFM +   +SI
Sbjct: 188 IFAPTMINPSAICESAAQLLFMNVQWVRSI 217


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 6   RIWILHNRWS*REDRELPN 62
           +IW  + R   ++D +LPN
Sbjct: 278 KIWFQNRRMKWKKDNKLPN 296



 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 139 DVLINCSKDSKIPKPPSGHK 198
           +V  NC   S +  P SGH+
Sbjct: 138 NVTPNCDVKSSVCSPGSGHQ 157


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 99  VLAPTSKQPWGFYSEVPYLLFMTIYCAKSIFFL 1
           VL  + K  W     + Y+ F+ I CA  +F++
Sbjct: 264 VLVQSEKIVW---LHLVYISFLGIICAADVFYI 293


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 6   RIWILHNRWS*REDRELPN 62
           +IW  + R   ++D +LPN
Sbjct: 278 KIWFQNRRMKWKKDNKLPN 296



 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 139 DVLINCSKDSKIPKPPSGHK 198
           +V  NC   S +  P SGH+
Sbjct: 138 NVTPNCDVKSSVCSPGSGHQ 157


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 328 YFCQSFSPFNFELGFN 281
           + C SF+ F F   FN
Sbjct: 443 FICNSFTKFEFNTVFN 458


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 48   YLLFMTIYCAKSIFFL 1
            Y+ F+ I CA  +F++
Sbjct: 997  YISFLGIICAADVFYI 1012


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 139 DVLINCSKDSKIPKPPSGHK 198
           +V  NC   S +  P SGH+
Sbjct: 138 NVTPNCDVKSSVCSPGSGHQ 157


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
 Frame = +1

Query: 193 HKWREVRHDNTVTWL--ASW 246
           HKW  V  D +  WL   SW
Sbjct: 302 HKWLLVNFDCSTMWLKDPSW 321


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -3

Query: 122 LFNFPIFGCSPRPLNNPGGSIRKFPIF 42
           L N     CSP P  N G  + +   F
Sbjct: 102 LCNINTDDCSPNPCRNNGSCVDRIADF 128


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/49 (20%), Positives = 23/49 (46%)
 Frame = +3

Query: 222 YSYMVSLLDREVQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKI 368
           ++ MV    +EVQ +    M      +K +  +Q  +  + L +C+ ++
Sbjct: 323 FALMVLAGHKEVQDKIVEEMNEVLGDIKKKPTYQDLQEMKYLERCVKEV 371


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/49 (20%), Positives = 23/49 (46%)
 Frame = +3

Query: 222 YSYMVSLLDREVQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKI 368
           ++ MV    +EVQ +    M      +K +  +Q  +  + L +C+ ++
Sbjct: 323 FALMVLAGHKEVQDKIVEEMNEVLGDIKKKPTYQDLQEMKYLERCVKEV 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,985
Number of Sequences: 336
Number of extensions: 2140
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)