Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0641.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 133 1e-32
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 4.8
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 25 6.3
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 25 6.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 6.3
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 6.3
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 8.4
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 25 8.4
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 8.4
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 8.4
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 133 bits (322), Expect = 1e-32
Identities = 53/90 (58%), Positives = 69/90 (76%)
Frame = +1
Query: 1 QKEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPK 180
+++Y +C +DG KEK+GNFRIEPPGLFRGRG HPK G LKRRV PE + IN + +P+
Sbjct: 314 EEKYKWCILDGRKEKVGNFRIEPPGLFRGRGSHPKTGSLKRRVYPEQITINIGEGVPVPE 373
Query: 181 PPSGHKWREVRHDNTVTWLASWTEKFSSKL 270
P GH+W EV+HDNTVTWLA+W E ++ +
Sbjct: 374 PLPGHQWAEVKHDNTVTWLATWHENINNNV 403
Score = 67.7 bits (158), Expect = 9e-13
Identities = 34/78 (43%), Positives = 45/78 (57%)
Frame = +3
Query: 255 VQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVAL 434
+ KYV L S LKG+ D +KYE +RKL ID IR+ R D K++ QR A+
Sbjct: 399 INNNVKYVFLAAGSSLKGQSDLKKYEKSRKLKDYIDDIRKGYRKDLKSELTVERQRGTAM 458
Query: 435 YFIDRLALTAXNEKDDEQ 488
Y ID AL A NEK +++
Sbjct: 459 YLIDVFALRAGNEKGEDE 476
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 187 SGHKWREVRHDNTVTWLASWTEKFS 261
+G KW + H NT +L T KFS
Sbjct: 529 TGEKWTMLHHINTTDYLNYETGKFS 553
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 217 DNTVTWLASWTEKFSS 264
DN TWL + EKF+S
Sbjct: 260 DNKCTWLVCYAEKFAS 275
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 246 DREVQQQAKYVMLNPSSKLKGEKDWQKYE 332
+REV K V+LNPS + E D +E
Sbjct: 193 EREVIDGKKQVILNPSDSQRSEMDTFTFE 221
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +3
Query: 318 WQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAV 428
W +E A C+ + N DWK +E + Q V
Sbjct: 1822 WADFENAAD--SCVRHLENNEETDWKFEEWRQMQDVV 1856
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Frame = -3
Query: 236 NHVTVLSCLTSLHLCPEG---GFGILLSFEQLIKTSSG 132
NH+ S + LH CP G G FE +I SG
Sbjct: 345 NHLLPSSSVVDLHYCPYEDILGIGHAKGFESIIVPGSG 382
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 225 SYMVSLLDREVQQQAKYVMLNPSSKL 302
S +++L DRE AK +ML+ S+L
Sbjct: 279 SRLLALADREADNNAKLIMLDRISQL 304
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 237 SLLDREVQQQAKYVMLNPSSKLKGEKDWQKY 329
S+L +VQQ A+ P S L GEKD KY
Sbjct: 233 SILLSDVQQVAEDT--TPFSPLAGEKDGSKY 261
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/36 (22%), Positives = 20/36 (55%)
Frame = +3
Query: 222 YSYMVSLLDREVQQQAKYVMLNPSSKLKGEKDWQKY 329
Y Y + D V ++++M+ ++L+ + DW ++
Sbjct: 971 YEYRKASSDMRVLMDSQFLMMKTFARLQAKGDWYEW 1006
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 182 GFGILLSFEQLIKTSSGITRLFNFPIFGCSPRPLNNP 72
GF ILLSF I T SG F+ CS +N P
Sbjct: 265 GFAILLSFNSPIWTMSGYDAPFHLS-EECSNASVNAP 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,234
Number of Sequences: 5004
Number of extensions: 34494
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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