Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0641.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...   131   3e-31
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570...    29   2.7  
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380...    27   6.3  
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072...    27   6.3  
01_03_0103 - 12567986-12568141,12568307-12568442,12568751-125688...    27   6.3  
05_06_0179 + 26170582-26170789,26171306-26171604                       27   8.4  

>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score =  131 bits (317), Expect = 3e-31
 Identities = 55/90 (61%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
 Frame = +1

Query: 1   QKEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPK 180
           +++Y +  +DG KEK+GNFR+EPPGLFRGRGEHPKMGKLKRR+ P D+ IN  K + IP+
Sbjct: 488 EEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPE 547

Query: 181 -PPSGHKWREVRHDNTVTWLASWTEKFSSK 267
            P  G  W+EV+HDNTVTWLA W +  S K
Sbjct: 548 CPIPGESWKEVKHDNTVTWLAFWNDPISQK 577



 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 37/77 (48%), Positives = 51/77 (66%)
 Frame = +3

Query: 258 QQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVALY 437
           Q+  KYV L  SS LKG+ D +KYE +RKL   + KIR+    D+++K+    Q AVA Y
Sbjct: 576 QKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATY 635

Query: 438 FIDRLALTAXNEKDDEQ 488
            ID+LAL A NEKD+++
Sbjct: 636 LIDKLALRAGNEKDEDE 652


>11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,
            5709679-5709975
          Length = 1214

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 151  NCSKDSKIPKPPSGHKWREVRHDNTVTWLASWTEKFSSKLSMSC*IPV 294
            NC K    P PP   KW  VR D  +   +SW    +   S SC  P+
Sbjct: 1062 NCPKLQLTPCPPRAKKWTIVRSDGII---SSWAGN-APHTSTSCSTPL 1105


>12_02_0272 -
           16634765-16635004,16635412-16635457,16636107-16638098,
           16639478-16640286
          Length = 1028

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
 Frame = -3

Query: 281 HDILSLLLNFSVQEANHVTVLSC-----LTSL---HLCPEGGFGILLSFEQLIKTSSGIT 126
           HD++  L+    QE N +T+ S      +T L    LC +  +G L + E++ K S    
Sbjct: 490 HDLMLDLIISKCQEENFITIASKQPVKNVTKLPVRRLCHQLSYGNL-AMERM-KLSQ--V 545

Query: 125 RLFN-FPIFGCSPRP 84
           R +N FP FGCS +P
Sbjct: 546 RSYNTFPAFGCSMQP 560


>10_08_0425 - 17806117-17806401,17806862-17806984,17807076-17807222,
            17807307-17807450,17808557-17808668,17808762-17808898,
            17809016-17809156,17810921-17811004,17811275-17811742,
            17811858-17811936,17812494-17812506,17813884-17814460,
            17814502-17814774,17814899-17815045,17815354-17815413,
            17816124-17816510
          Length = 1058

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 26/89 (29%), Positives = 43/89 (48%)
 Frame = +3

Query: 222  YSYMVSLLDREVQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAK 401
            ++  V  ++ +VQ     V+    S L+  KD     T+R       K++EN R+D + K
Sbjct: 786  FNEKVKSIEEKVQSVRNAVIAEFKSMLRESKDITS--TSRWT-----KVKENFRSDARYK 838

Query: 402  EMQVXQRAVALYFIDRLALTAXNEKDDEQ 488
             M+  +R VA  F + +A     EK+ EQ
Sbjct: 839  AMKHEEREVA--FNEYIAELKSAEKEAEQ 865


>01_03_0103 - 12567986-12568141,12568307-12568442,12568751-12568824,
            12568932-12569175,12569480-12569766,12570618-12571103,
            12571348-12571459,12571540-12571745,12573071-12573276,
            12573831-12574162,12574284-12574825,12574967-12576308,
            12576386-12576457,12578438-12578505,12579011-12580174
          Length = 1808

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 121  RRVMP--EDVLINCSKDSKIPKPPSGHKW 201
            ++++P   +V+++C + SKI KP   H W
Sbjct: 1184 KQILPLLRNVILSCIESSKINKPEPQHSW 1212


>05_06_0179 + 26170582-26170789,26171306-26171604
          Length = 168

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 269 SLLLNFSVQEANHVTVLSCLTSLHLCPEGGFGILLSFEQLIKTSSGITRLFNFPIFGCSP 90
           S L +F+ QE       S   +  +   G  G+ L FE+ +K  +G+  L++   F  SP
Sbjct: 102 SQLTSFTSQECRVYVPRSPSRACAVPGHGRRGLPLKFEEFVKRDNGLQGLYSVGNFVFSP 161

Query: 89  R 87
           +
Sbjct: 162 K 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,976,438
Number of Sequences: 37544
Number of extensions: 227151
Number of successful extensions: 557
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)