Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0641.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9234| Best HMM Match : Topoisom_I_N (HMM E-Value=0)                127   6e-30
SB_57332| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)             29   2.8  
SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)                     27   6.5  
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_9234| Best HMM Match : Topoisom_I_N (HMM E-Value=0)
          Length = 335

 Score =  127 bits (306), Expect = 6e-30
 Identities = 50/73 (68%), Positives = 64/73 (87%)
 Frame = +1

Query: 7   EYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKPP 186
           EYGFC +D HK+++GNF+IEPPGLFRGRG+HPK GKLK+RVMPE+V IN  KD+K+P PP
Sbjct: 183 EYGFCMMDHHKQRVGNFKIEPPGLFRGRGDHPKQGKLKKRVMPEEVTINIGKDAKVPDPP 242

Query: 187 SGHKWREVRHDNT 225
           +GHKW++V  D+T
Sbjct: 243 AGHKWKKVICDDT 255



 Score = 33.9 bits (74), Expect(2) = 0.024
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +3

Query: 306 GEKDWQKYETARKL 347
           GEKDW+KYETARKL
Sbjct: 256 GEKDWRKYETARKL 269



 Score = 20.6 bits (41), Expect(2) = 0.024
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 447 RLALTAXNEKDDE 485
           +LAL A +EKDD+
Sbjct: 270 KLALRAGHEKDDD 282


>SB_57332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +1

Query: 154 CSKDSKIPKPPS-----GHKWREVRHDNTVTWLASWTEKF 258
           CS  SKIP PP      GH     +  N ++ L +W+EK+
Sbjct: 16  CSPLSKIPVPPGGFPLIGHLLTFAKERNLLSLLLTWSEKY 55


>SB_32737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +1

Query: 154 CSKDSKIPKPPS-----GHKWREVRHDNTVTWLASWTEKF 258
           CS  SKIP PP      GH     +  N ++ L +W+EK+
Sbjct: 185 CSPLSKIPVPPGGFPLIGHLLTFAKERNLLSLLLTWSEKY 224


>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
          Length = 2374

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 31   GHKEKIGNFRI---EPPGLFRGRGEHPKMGKLKRRVMP 135
            GH+E+  +F I   +P   F+ R  HP  GKL R V+P
Sbjct: 1899 GHEER-SSFSILEPQPSATFQTRKTHPNGGKLCRAVLP 1935


>SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)
          Length = 956

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 40  EKIGNFRIEPPGLFRGRG--EHPKMGKLKRRVMP 135
           EK+ NFR E P LF+G G  + P    LK+  +P
Sbjct: 298 EKVPNFRKEFPKLFKGLGMMKEPYKVPLKKDAVP 331


>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 291 SSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVAL 434
           ++ ++ EK+ +KY+      +  + +REN RAD +   +Q+ Q+  A+
Sbjct: 698 AAAVEAEKEEEKYKPKVIPEQTREPLRENKRADSREINLQIQQQHEAI 745


>SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1821

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 40   EKIGNFRIEPPGLFRGRG--EHPKMGKLKRRVMP 135
            EK+ NF  E P LF+G G  + P M  LK   +P
Sbjct: 1108 EKVPNFSEESPKLFKGLGMMKEPYMIPLKEDAVP 1141


>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 98  CSPRPLNNPGGSIRK 54
           CSP P N PG  IRK
Sbjct: 438 CSPDPYNQPGAKIRK 452


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,567,728
Number of Sequences: 59808
Number of extensions: 243717
Number of successful extensions: 735
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)