Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0641.Seq
         (499 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80064-1|AAC24158.1|  972|Drosophila melanogaster DNA topoisomer...   160   8e-40
M74557-1|AAA28951.1|  972|Drosophila melanogaster topoisomerase ...   160   8e-40
BT024938-1|ABE01168.1|  382|Drosophila melanogaster IP16129p pro...   160   8e-40
BT023755-1|AAZ41763.1|  974|Drosophila melanogaster RE58921p pro...   160   8e-40
AE014298-2126|AAN09660.1|  581|Drosophila melanogaster CG6146-PB...   160   8e-40
AE014298-2125|AAX52496.1|  974|Drosophila melanogaster CG6146-PC...   160   8e-40
AE014298-2124|AAF48440.1|  974|Drosophila melanogaster CG6146-PA...   160   8e-40

>U80064-1|AAC24158.1|  972|Drosophila melanogaster DNA topoisomerase
           I protein.
          Length = 972

 Score =  160 bits (389), Expect = 8e-40
 Identities = 65/89 (73%), Positives = 74/89 (83%)
 Frame = +1

Query: 4   KEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKP 183
           KE+GFC IDGHKEKIGNFR+EPPGLFRGRGEHPKMG +KRR+   DV INC KDSK+P P
Sbjct: 559 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVPSP 618

Query: 184 PSGHKWREVRHDNTVTWLASWTEKFSSKL 270
           P G +W+EVRHDNTVTWLASW E    ++
Sbjct: 619 PPGSRWKEVRHDNTVTWLASWIENVQGQV 647



 Score =  119 bits (287), Expect = 2e-27
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +3

Query: 255 VQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVAL 434
           VQ Q KY+MLNPSSKLKGEKD  KYETAR+L K IDKIR   R +WK+KEM+V QRAVAL
Sbjct: 643 VQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVAL 702

Query: 435 YFIDRLALTAXNEKDDEQ 488
           YFID+LAL A NEKD++Q
Sbjct: 703 YFIDKLALRAGNEKDEDQ 720


>M74557-1|AAA28951.1|  972|Drosophila melanogaster topoisomerase I
           protein.
          Length = 972

 Score =  160 bits (389), Expect = 8e-40
 Identities = 65/89 (73%), Positives = 74/89 (83%)
 Frame = +1

Query: 4   KEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKP 183
           KE+GFC IDGHKEKIGNFR+EPPGLFRGRGEHPKMG +KRR+   DV INC KDSK+P P
Sbjct: 559 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVPSP 618

Query: 184 PSGHKWREVRHDNTVTWLASWTEKFSSKL 270
           P G +W+EVRHDNTVTWLASW E    ++
Sbjct: 619 PPGSRWKEVRHDNTVTWLASWIENVQGQV 647



 Score =  119 bits (287), Expect = 2e-27
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +3

Query: 255 VQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVAL 434
           VQ Q KY+MLNPSSKLKGEKD  KYETAR+L K IDKIR   R +WK+KEM+V QRAVAL
Sbjct: 643 VQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVAL 702

Query: 435 YFIDRLALTAXNEKDDEQ 488
           YFID+LAL A NEKD++Q
Sbjct: 703 YFIDKLALRAGNEKDEDQ 720


>BT024938-1|ABE01168.1|  382|Drosophila melanogaster IP16129p
           protein.
          Length = 382

 Score =  160 bits (389), Expect = 8e-40
 Identities = 65/89 (73%), Positives = 74/89 (83%)
 Frame = +1

Query: 4   KEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKP 183
           KE+GFC IDGHKEKIGNFR+EPPGLFRGRGEHPKMG +KRR+   DV INC KDSK+P P
Sbjct: 74  KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVPSP 133

Query: 184 PSGHKWREVRHDNTVTWLASWTEKFSSKL 270
           P G +W+EVRHDNTVTWLASW E    ++
Sbjct: 134 PPGSRWKEVRHDNTVTWLASWIENVQGQV 162



 Score =  119 bits (287), Expect = 2e-27
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +3

Query: 255 VQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVAL 434
           VQ Q KY+MLNPSSKLKGEKD  KYETAR+L K IDKIR   R +WK+KEM+V QRAVAL
Sbjct: 158 VQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVAL 217

Query: 435 YFIDRLALTAXNEKDDEQ 488
           YFID+LAL A NEKD++Q
Sbjct: 218 YFIDKLALRAGNEKDEDQ 235


>BT023755-1|AAZ41763.1|  974|Drosophila melanogaster RE58921p
           protein.
          Length = 974

 Score =  160 bits (389), Expect = 8e-40
 Identities = 65/89 (73%), Positives = 74/89 (83%)
 Frame = +1

Query: 4   KEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKP 183
           KE+GFC IDGHKEKIGNFR+EPPGLFRGRGEHPKMG +KRR+   DV INC KDSK+P P
Sbjct: 561 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVPSP 620

Query: 184 PSGHKWREVRHDNTVTWLASWTEKFSSKL 270
           P G +W+EVRHDNTVTWLASW E    ++
Sbjct: 621 PPGSRWKEVRHDNTVTWLASWIENVQGQV 649



 Score =  119 bits (287), Expect = 2e-27
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +3

Query: 255 VQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVAL 434
           VQ Q KY+MLNPSSKLKGEKD  KYETAR+L K IDKIR   R +WK+KEM+V QRAVAL
Sbjct: 645 VQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVAL 704

Query: 435 YFIDRLALTAXNEKDDEQ 488
           YFID+LAL A NEKD++Q
Sbjct: 705 YFIDKLALRAGNEKDEDQ 722


>AE014298-2126|AAN09660.1|  581|Drosophila melanogaster CG6146-PB,
           isoform B protein.
          Length = 581

 Score =  160 bits (389), Expect = 8e-40
 Identities = 65/89 (73%), Positives = 74/89 (83%)
 Frame = +1

Query: 4   KEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKP 183
           KE+GFC IDGHKEKIGNFR+EPPGLFRGRGEHPKMG +KRR+   DV INC KDSK+P P
Sbjct: 168 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVPSP 227

Query: 184 PSGHKWREVRHDNTVTWLASWTEKFSSKL 270
           P G +W+EVRHDNTVTWLASW E    ++
Sbjct: 228 PPGSRWKEVRHDNTVTWLASWIENVQGQV 256



 Score =  119 bits (287), Expect = 2e-27
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +3

Query: 255 VQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVAL 434
           VQ Q KY+MLNPSSKLKGEKD  KYETAR+L K IDKIR   R +WK+KEM+V QRAVAL
Sbjct: 252 VQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVAL 311

Query: 435 YFIDRLALTAXNEKDDEQ 488
           YFID+LAL A NEKD++Q
Sbjct: 312 YFIDKLALRAGNEKDEDQ 329


>AE014298-2125|AAX52496.1|  974|Drosophila melanogaster CG6146-PC,
           isoform C protein.
          Length = 974

 Score =  160 bits (389), Expect = 8e-40
 Identities = 65/89 (73%), Positives = 74/89 (83%)
 Frame = +1

Query: 4   KEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKP 183
           KE+GFC IDGHKEKIGNFR+EPPGLFRGRGEHPKMG +KRR+   DV INC KDSK+P P
Sbjct: 561 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVPSP 620

Query: 184 PSGHKWREVRHDNTVTWLASWTEKFSSKL 270
           P G +W+EVRHDNTVTWLASW E    ++
Sbjct: 621 PPGSRWKEVRHDNTVTWLASWIENVQGQV 649



 Score =  119 bits (287), Expect = 2e-27
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +3

Query: 255 VQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVAL 434
           VQ Q KY+MLNPSSKLKGEKD  KYETAR+L K IDKIR   R +WK+KEM+V QRAVAL
Sbjct: 645 VQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVAL 704

Query: 435 YFIDRLALTAXNEKDDEQ 488
           YFID+LAL A NEKD++Q
Sbjct: 705 YFIDKLALRAGNEKDEDQ 722


>AE014298-2124|AAF48440.1|  974|Drosophila melanogaster CG6146-PA,
           isoform A protein.
          Length = 974

 Score =  160 bits (389), Expect = 8e-40
 Identities = 65/89 (73%), Positives = 74/89 (83%)
 Frame = +1

Query: 4   KEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKP 183
           KE+GFC IDGHKEKIGNFR+EPPGLFRGRGEHPKMG +KRR+   DV INC KDSK+P P
Sbjct: 561 KEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDVSINCGKDSKVPSP 620

Query: 184 PSGHKWREVRHDNTVTWLASWTEKFSSKL 270
           P G +W+EVRHDNTVTWLASW E    ++
Sbjct: 621 PPGSRWKEVRHDNTVTWLASWIENVQGQV 649



 Score =  119 bits (287), Expect = 2e-27
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +3

Query: 255 VQQQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVAL 434
           VQ Q KY+MLNPSSKLKGEKD  KYETAR+L K IDKIR   R +WK+KEM+V QRAVAL
Sbjct: 645 VQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVAL 704

Query: 435 YFIDRLALTAXNEKDDEQ 488
           YFID+LAL A NEKD++Q
Sbjct: 705 YFIDKLALRAGNEKDEDQ 722


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,829,590
Number of Sequences: 53049
Number of extensions: 376291
Number of successful extensions: 1134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1763278080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)