Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0641.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 156 7e-39
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 156 7e-39
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 156 7e-39
Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical p... 28 4.3
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p... 28 4.3
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z75529-2|CAA99783.1| 755|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 27 10.0
U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical pr... 27 10.0
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 156 bits (379), Expect = 7e-39
Identities = 62/83 (74%), Positives = 73/83 (87%)
Frame = +1
Query: 4 KEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKP 183
K YG IDGH++K+ NFRIEPPG+FRGRG HPKMG +K+R+MPEDV+INC KD++IPKP
Sbjct: 306 KIYGIAIIDGHRQKVANFRIEPPGVFRGRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKP 365
Query: 184 PSGHKWREVRHDNTVTWLASWTE 252
P GHKW+EVRHDNTVTWL SWTE
Sbjct: 366 PPGHKWKEVRHDNTVTWLCSWTE 388
Score = 104 bits (250), Expect = 3e-23
Identities = 50/75 (66%), Positives = 61/75 (81%)
Frame = +3
Query: 264 QAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVALYFI 443
Q KY+MLNPSSK+KGEKD++KYETAR+L K I IRE D+K+KEM+V QRA ALYFI
Sbjct: 393 QNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFI 452
Query: 444 DRLALTAXNEKDDEQ 488
D+LAL A NEKD ++
Sbjct: 453 DKLALRAGNEKDVDE 467
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 156 bits (379), Expect = 7e-39
Identities = 62/83 (74%), Positives = 73/83 (87%)
Frame = +1
Query: 4 KEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKP 183
K YG IDGH++K+ NFRIEPPG+FRGRG HPKMG +K+R+MPEDV+INC KD++IPKP
Sbjct: 378 KIYGIAIIDGHRQKVANFRIEPPGVFRGRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKP 437
Query: 184 PSGHKWREVRHDNTVTWLASWTE 252
P GHKW+EVRHDNTVTWL SWTE
Sbjct: 438 PPGHKWKEVRHDNTVTWLCSWTE 460
Score = 104 bits (250), Expect = 3e-23
Identities = 50/75 (66%), Positives = 61/75 (81%)
Frame = +3
Query: 264 QAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVALYFI 443
Q KY+MLNPSSK+KGEKD++KYETAR+L K I IRE D+K+KEM+V QRA ALYFI
Sbjct: 465 QNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFI 524
Query: 444 DRLALTAXNEKDDEQ 488
D+LAL A NEKD ++
Sbjct: 525 DKLALRAGNEKDVDE 539
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 156 bits (379), Expect = 7e-39
Identities = 62/83 (74%), Positives = 73/83 (87%)
Frame = +1
Query: 4 KEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKP 183
K YG IDGH++K+ NFRIEPPG+FRGRG HPKMG +K+R+MPEDV+INC KD++IPKP
Sbjct: 378 KIYGIAIIDGHRQKVANFRIEPPGVFRGRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKP 437
Query: 184 PSGHKWREVRHDNTVTWLASWTE 252
P GHKW+EVRHDNTVTWL SWTE
Sbjct: 438 PPGHKWKEVRHDNTVTWLCSWTE 460
Score = 104 bits (250), Expect = 3e-23
Identities = 50/75 (66%), Positives = 61/75 (81%)
Frame = +3
Query: 264 QAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVALYFI 443
Q KY+MLNPSSK+KGEKD++KYETAR+L K I IRE D+K+KEM+V QRA ALYFI
Sbjct: 465 QNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFI 524
Query: 444 DRLALTAXNEKDDEQ 488
D+LAL A NEKD ++
Sbjct: 525 DKLALRAGNEKDVDE 539
>Z93382-11|CAI46609.1| 390|Caenorhabditis elegans Hypothetical
protein F45G2.2b protein.
Length = 390
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 300 LKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRA 425
LK E + YE A+K + ++++RE + +W KE ++ A
Sbjct: 70 LKAESE-SNYENAKKASE-LERLREKEKKEWDEKERRMQMEA 109
>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
protein F45G2.2a protein.
Length = 1235
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 300 LKGEKDWQKYETARKLHKCIDKIRENXRADWKAKEMQVXQRA 425
LK E + YE A+K + ++++RE + +W KE ++ A
Sbjct: 915 LKAESE-SNYENAKKASE-LERLREKEKKEWDEKERRMQMEA 954
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
protein B0024.8 protein.
Length = 1185
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 279 MLNPSSKLKGEKDW-QKYETARKLHKCIDKI 368
++ ++ K E+DW K++ +L KCIDKI
Sbjct: 41 LIRAATIAKREEDWFHKFQKKGELFKCIDKI 71
>Z75529-2|CAA99783.1| 755|Caenorhabditis elegans Hypothetical
protein C44H9.2 protein.
Length = 755
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 278 DILSLLLNFSVQEANHVTVLSCLTSLHLCPEGGFGILLSFEQL 150
DIL + N + EA+ + + + L P GFG++ +QL
Sbjct: 681 DILKHVSNIQIDEASQLPEYTLIYLLQKFPNSGFGLVGDIKQL 723
>Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical
protein W08E3.3 protein.
Length = 395
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +3
Query: 324 KYETARKLHKCIDKIRENXRADWKAKEMQVXQRAVALYFIDRLALTAXNEKD 479
+Y+T ++ KC+++ + + W KE+++ + + L + L +EKD
Sbjct: 181 EYDTLVRVKKCLEEKKPVRQELWNEKEIEILNKHLFLTAKPIVYLVNLSEKD 232
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 26.6 bits (56), Expect = 10.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 19 CTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKL 117
CT++GH + I + + P G + G K K+
Sbjct: 81 CTLEGHTKSISSAKFSPCGKYLGTSSADKTVKI 113
>U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical
protein C41G11.4c protein.
Length = 557
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 13 GFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVMPEDVLINCSKDSKIPKPPSG 192
G +GHK ++ R+ P L +G G + M ++K+ V+P S + I G
Sbjct: 411 GSVHFNGHKTEL---RL--PNLTKGEGRNENMTRVKQHVIPIGTKAKRSSECSIKHSLGG 465
Query: 193 H 195
H
Sbjct: 466 H 466
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,276,734
Number of Sequences: 27780
Number of extensions: 197481
Number of successful extensions: 539
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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