Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0641.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   5.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 345 LHKCIDKIRENXRADWKAKEMQVXQR 422
           LHKC  ++     A W   E++  +R
Sbjct: 558 LHKCFMRVENVKGAVWTVDEVEFYKR 583


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 78  QPWGFYSEVPYLLFMTIYCAKSI 10
           Q WGF + V   LF+ I+   SI
Sbjct: 476 QDWGFVAMVLDRLFLWIFTIASI 498


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 140 SSGITRLFNFPIFGCSPRPLNNPGG 66
           +SGI  +    +F  +P PLN   G
Sbjct: 346 ASGIWGIIAIGLFADNPYPLNTTNG 370


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +1

Query: 211 RHDNTVTWLASWTEKF 258
           R +N + WL +W E++
Sbjct: 278 RGNNNLKWLVNWGEQW 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,331
Number of Sequences: 438
Number of extensions: 2209
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)