Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0640.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   2.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.7  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   6.2  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -1

Query: 184 QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 77
           QG  G H  +      ++  G E  HL     GH P
Sbjct: 379 QGYQGEHPNYNHYGYHYSGDGGEVAHLPNTHMGHEP 414


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -1

Query: 184 QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 77
           QG  G H  +      ++  G E  HL     GH P
Sbjct: 327 QGYQGEHPNYNHYGYHYSGDGGEVAHLPNTHMGHEP 362


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 265 IIHKFPDSNLMKSIIFVVAMSNWMESL 345
           II +F    L   +  VV +SNW E L
Sbjct: 239 IIARFNIERLCNGLKRVVKLSNWREPL 265


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
          transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 94 RQGHPPHHRRG 62
          RQG PPHH  G
Sbjct: 57 RQGIPPHHYGG 67


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 167 CPVESLMCTMSKEPGCLSRDTMVPTRPKLR 256
           C V+S     +K  GC S ++ V T   LR
Sbjct: 95  CSVKSESSQAAKYGGCFSGESTVLTSTGLR 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,828
Number of Sequences: 336
Number of extensions: 2855
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)