Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0640.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 111 4e-26
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 111 4e-26
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 111 4e-26
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 31 0.096
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.1
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 2.7
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 4.8
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 25 4.8
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 6.3
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 6.3
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 111 bits (268), Expect = 4e-26
Identities = 52/77 (67%), Positives = 60/77 (77%)
Frame = -3
Query: 473 ITPEEAKYKLCKVKRVTTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 294
IT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 114 ITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Query: 293 KFESGNLCMITXGVTWG 243
KF++ M+T G G
Sbjct: 174 KFDTSAQVMVTGGRNMG 190
Score = 106 bits (254), Expect = 2e-24
Identities = 47/75 (62%), Positives = 62/75 (82%)
Frame = -2
Query: 261 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 82
G RN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG+
Sbjct: 185 GGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGV 244
Query: 81 RLTIAEERDKRIAAK 37
+L+I EERD+R A K
Sbjct: 245 KLSITEERDRRRALK 259
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 111 bits (268), Expect = 4e-26
Identities = 52/77 (67%), Positives = 60/77 (77%)
Frame = -3
Query: 473 ITPEEAKYKLCKVKRVTTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 294
IT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 114 ITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Query: 293 KFESGNLCMITXGVTWG 243
KF++ M+T G G
Sbjct: 174 KFDTSAQVMVTGGRNMG 190
Score = 107 bits (256), Expect = 1e-24
Identities = 47/75 (62%), Positives = 62/75 (82%)
Frame = -2
Query: 261 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 82
G RN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG+
Sbjct: 185 GGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGV 244
Query: 81 RLTIAEERDKRIAAK 37
+L+I EERD+R A K
Sbjct: 245 KLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 111 bits (268), Expect = 4e-26
Identities = 52/77 (67%), Positives = 60/77 (77%)
Frame = -3
Query: 473 ITPEEAKYKLCKVKRVTTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 294
IT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FI
Sbjct: 114 ITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFI 173
Query: 293 KFESGNLCMITXGVTWG 243
KF++ M+T G G
Sbjct: 174 KFDTSAQVMVTGGRNMG 190
Score = 106 bits (254), Expect = 2e-24
Identities = 47/75 (62%), Positives = 62/75 (82%)
Frame = -2
Query: 261 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 82
G RN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG+
Sbjct: 185 GGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGV 244
Query: 81 RLTIAEERDKRIAAK 37
+L+I EERD+R A K
Sbjct: 245 KLSITEERDRRRALK 259
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.1 bits (67), Expect = 0.096
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +1
Query: 106 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD-GAHTPQVTP-XV 264
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+ G +T
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHEIGGRLLHITTVNE 946
Query: 265 IIHKFPDS 288
++H P S
Sbjct: 947 MMHNVPSS 954
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 351 QSQRFHPVRHCNYED 307
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 384 WPHHPLPRPTYQSQR 340
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 4.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 381 PHHPLPRPTYQSQRFHPVRHCNYEDY 304
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 276 LVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTG 169
L+ D + +GR G++ S E H DI+ + S G
Sbjct: 248 LIIDEAQTGIGRTGSMFSFEHHGIVPDILTLSKSLG 283
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 237 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 142
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 378 HHPLPRPTYQSQRFHPVR 325
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,028
Number of Sequences: 5004
Number of extensions: 42448
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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