Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0640.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 2e-29
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0) 32 0.30
SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24) 29 1.6
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 29 2.1
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 3.7
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1) 27 6.5
SB_38698| Best HMM Match : MiaE (HMM E-Value=5.8) 27 6.5
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 27 6.5
SB_47426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12) 27 8.6
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 27 8.6
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 125 bits (301), Expect = 2e-29
Identities = 53/75 (70%), Positives = 65/75 (86%)
Frame = -2
Query: 261 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 82
G RN+GRVG + RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG+
Sbjct: 609 GGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGV 668
Query: 81 RLTIAEERDKRIAAK 37
RL+IAEERD+RIA K
Sbjct: 669 RLSIAEERDRRIAEK 683
Score = 107 bits (258), Expect = 4e-24
Identities = 47/77 (61%), Positives = 60/77 (77%)
Frame = -3
Query: 473 ITPEEAKYKLCKVKRVTTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 294
IT EEAKYKL +V+RV G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+I
Sbjct: 538 ITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYI 597
Query: 293 KFESGNLCMITXGVTWG 243
KF++GN+ M+ G G
Sbjct: 598 KFDTGNMAMVVGGRNMG 614
>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 541
Score = 31.9 bits (69), Expect = 0.30
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 272 CMITXGVTWGVWAPSCPARDIPAPSTLCT 186
C T G WG+ CPA+D A + LC+
Sbjct: 422 CCCTAGKAWGISCELCPAKDTRAYNELCS 450
>SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 202 GAGMSLAGHDGAHTPQVTPXVIIHKFPDSNL 294
G S GH G++ PQ + V+I FP +NL
Sbjct: 233 GIFSSEGGHSGSYFPQSSGKVVIRSFPVTNL 263
>SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)
Length = 565
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 202 GAGMSLAGHDGAHTPQVTPXVIIHKFPDSNL 294
G S GH G++ PQ + V+I FP +NL
Sbjct: 380 GIFSSEGGHSGSYFPQSSGKVVIRSFPVTNL 410
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = -3
Query: 473 ITPEEAKYKLCKVKRVTTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 294
+TP+ K C+V R++TGP +++ +G + +++ ++ + + + F
Sbjct: 290 VTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV--FP 347
Query: 293 KFESGNLCM 267
FE G CM
Sbjct: 348 DFEKGVACM 356
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 167 CPVESLMCTMS-KEPGCLSRDTMVPTRPKLRLP 262
C ++ +CT+ KEPG DT PTR K +LP
Sbjct: 556 CTADNDLCTVCCKEPG--KDDTCTPTRDKTQLP 586
>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 148 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 56
+Q H+ G+ H GH HHRR +G
Sbjct: 41 DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71
>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 147 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 34
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 147 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 34
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -1
Query: 241 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 68
C H H + + + H +H LH TH+ E + R G G R PH+R
Sbjct: 18 CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74
>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = -1
Query: 142 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 44
+VHN +G EGV +R GH H RG+ HR
Sbjct: 197 QVHNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -1
Query: 235 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 65
HH P +LRH H+ + H RH H+R H H H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 169 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 41
THL E + + R+ G +AAA + P + R G +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273
>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 47 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEP 208
+ LSR + R+P P ++ +P P T + + +CPV + TMS P
Sbjct: 48 LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFP 96
>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 171 PWSP*CAQCRRSRDVSRGTRWCPHAPSYAXRDHTQVPRLK 290
PW P +Q R + + GT+ P PS+ RDH +K
Sbjct: 311 PWGP--SQNPRDQATTLGTKPQPSGPSHNPRDHATTLGIK 348
>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
Length = 244
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -1
Query: 199 RHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 71
+H H+ HGTH +H V + H + V H HH
Sbjct: 137 QHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 180
>SB_38698| Best HMM Match : MiaE (HMM E-Value=5.8)
Length = 284
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -3
Query: 269 MITXGVTWGVWAPSCP-ARDIPAPSTLCTSRTPRDTPSP 156
++ GV W W P C R P ++ R PR TP P
Sbjct: 113 LLRDGVEWS-WLPECDHLRSPPDVASTPVRRYPRRTPKP 150
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 222 GTRWCPHAPSYAXRDHTQVPRLKLDEVHNLRSCNV*LDGIVDFDKWV 362
G +WCP RD + P L++D C+V +DG D++V
Sbjct: 403 GQKWCP-------RDGDRTPWLQIDMNELYYICSVRVDGYTPLDQYV 442
>SB_47426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 244 ACGHH-RVPRETSRLLRHCAHQGLHGT 167
ACG R+P + S L R+CA G +GT
Sbjct: 66 ACGSFVRLPEDNSILTRNCAKWGSNGT 92
>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
Length = 695
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 21 PTARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRR 164
P P R +CP G C A +C+P C CR+ + + RR
Sbjct: 642 PQTANPMQRQSCP------GACASSCAPKCSPGC-CRILSATGQNRRR 682
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 160 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 29
RH + + NRQ H+ RQ H HRR + HR + +R
Sbjct: 160 RHRQKHQRRNRQKHQ----RRQRQEHQRRHRRQHQRRHRQKHQR 199
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -1
Query: 160 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVG 20
+H + ++VHN++GH G + +G QA + + R +G
Sbjct: 880 KHHIIRQVHNKEGHMGPTQVLSSVREKYWILKGGAQAKQEEFGRIIG 926
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +3
Query: 105 RCTPSCPCRL*TRCSTSWRRCVPWSP*CAQCRRSRDVSRGTRWCPHAPSYAXRDHTQVPR 284
RC+ PC C +C+P S C ++ GT C +A Y + H +
Sbjct: 900 RCSCCPPCFTGQHCEKGINKCIPSSNPCKNGATCSNL-HGTYTCTYATGYTGK-HCEKGE 957
Query: 285 LK 290
+K
Sbjct: 958 IK 959
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,155,683
Number of Sequences: 59808
Number of extensions: 403387
Number of successful extensions: 1395
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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