Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0640.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 111 3e-25
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 111 3e-25
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 111 3e-25
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 33 0.11
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 1.3
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 1.7
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 1.7
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 29 2.3
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 4.0
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 28 4.0
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 27 5.3
At3g63100.1 68416.m07087 glycine-rich protein 27 5.3
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa... 27 5.3
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 27 7.0
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 27 7.0
At5g52440.1 68418.m06507 HCF106 protein identical to HCF106 [Ara... 27 9.3
At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger) fa... 27 9.3
At2g28130.1 68415.m03417 expressed protein 27 9.3
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 111 bits (266), Expect = 3e-25
Identities = 51/83 (61%), Positives = 65/83 (78%)
Frame = -2
Query: 285 VWELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 106
V +V G RN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 105 SLPRGKGIRLTIAEERDKRIAAK 37
SLP+GKGI+LTI EE KR+A++
Sbjct: 237 SLPKGKGIKLTIIEEARKRLASQ 259
Score = 103 bits (248), Expect = 5e-23
Identities = 45/73 (61%), Positives = 58/73 (79%)
Frame = -3
Query: 473 ITPEEAKYKLCKVKRVTTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 294
I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FI
Sbjct: 114 IKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFI 173
Query: 293 KFESGNLCMITXG 255
KF+ GN+ M+T G
Sbjct: 174 KFDVGNVVMVTGG 186
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 111 bits (266), Expect = 3e-25
Identities = 51/83 (61%), Positives = 65/83 (78%)
Frame = -2
Query: 285 VWELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 106
V +V G RN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 105 SLPRGKGIRLTIAEERDKRIAAK 37
SLP+GKGI+LTI EE KR+A++
Sbjct: 237 SLPKGKGIKLTIIEEARKRLASQ 259
Score = 103 bits (247), Expect = 7e-23
Identities = 45/73 (61%), Positives = 58/73 (79%)
Frame = -3
Query: 473 ITPEEAKYKLCKVKRVTTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 294
I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FI
Sbjct: 114 IKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFI 173
Query: 293 KFESGNLCMITXG 255
KF+ GN+ M+T G
Sbjct: 174 KFDVGNVVMVTGG 186
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 111 bits (266), Expect = 3e-25
Identities = 51/83 (61%), Positives = 65/83 (78%)
Frame = -2
Query: 285 VWELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 106
V +V G RN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 105 SLPRGKGIRLTIAEERDKRIAAK 37
SLP+GKGI+LTI EE KR++A+
Sbjct: 237 SLPKGKGIKLTIIEEARKRLSAQ 259
Score = 103 bits (247), Expect = 7e-23
Identities = 45/73 (61%), Positives = 58/73 (79%)
Frame = -3
Query: 473 ITPEEAKYKLCKVKRVTTGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFI 294
I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FI
Sbjct: 114 IKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFI 173
Query: 293 KFESGNLCMITXG 255
KF+ GN+ M+T G
Sbjct: 174 KFDVGNVVMVTGG 186
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 187 HQGLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 44
HQG+HG + H ++ + + H+G+H + GH H+ G G H+
Sbjct: 154 HQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQ 203
Score = 31.9 bits (69), Expect = 0.25
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 187 HQGLHGT--HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 44
HQG HG H H ++ + + H+G+H + GH H+ G G H+
Sbjct: 130 HQGGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQ 179
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 187 HQGLHGTHL--RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 47
HQ +HG RH ++ + + H+G+H + GH H+ G H
Sbjct: 202 HQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQGGHRIQHQGMHGMQH 250
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -1
Query: 187 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 23
HQG HG ++H Q +H Q H+G H + GH H+ G H QGR +
Sbjct: 170 HQGGHG--MQH---QGMHGMQ-HQGGHGMEHQGGHGMQHQDMHGMQH--QGRHGM 216
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -1
Query: 187 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 32
HQG HG ++H Q +H Q H+G H + GH H+ G H+ R
Sbjct: 194 HQGGHG--MQH---QDMHGMQ-HQGRHGMQHQGGHEMQHQGMHGMQHQGGHR 239
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 122 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 217
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 122 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 217
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 122 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 217
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 91 QGHPPHHRRGAGQAHRSQG 35
QGHPPH G H++QG
Sbjct: 132 QGHPPHPMHHQGMMHQAQG 150
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 122 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 217
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 27.9 bits (59), Expect = 4.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 285 VWELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFAT 154
V E++ D GRR G + + R + DI+HIK +TF T
Sbjct: 166 VREVIEDEGRRTAG-IFSHFQRPNLETNADIIHIKMLRNNTFVT 208
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 216 RHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 100
R P +V + HT A T NNVF G+GT + +
Sbjct: 323 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.5 bits (58), Expect = 5.3
Identities = 23/70 (32%), Positives = 25/70 (35%)
Frame = -1
Query: 241 CGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 62
CG R + R HC H HG H H GH+ H GH H G
Sbjct: 57 CGGRR--HDYGRDCCHCDH--CHGHGYGHG-----HREHGHDRGH------GHGRGHGHG 101
Query: 61 AGQAHRSQGR 32
G HR GR
Sbjct: 102 HGHGHRRHGR 111
>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 312
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 2 KVYCP*PYCAATLAAMRLSRSS 67
+VYCP P C++ ++ +LS S+
Sbjct: 247 RVYCPNPLCSSLMSVTKLSNST 268
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 2 KVYCP*PYCAATLAAMRLSRSS 67
+VYCP P C+A ++ ++S S+
Sbjct: 384 RVYCPYPRCSALMSKTKISESA 405
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 2 KVYCP*PYCAATLAAMRLSRSS 67
+VYCP P C++ ++ +LS S+
Sbjct: 257 RVYCPNPRCSSLMSVTKLSNST 278
>At5g52440.1 68418.m06507 HCF106 protein identical to HCF106
[Arabidopsis thaliana] GI:4894914; contains Pfam profile
PF02416: mttA/Hcf106 family
Length = 260
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = -3
Query: 419 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITXGVTWGV 240
GPK + + + G+T+R P I+ + D +T + + + T V
Sbjct: 106 GPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLEREIGLDDISTPNVYNQNRTNPV 165
Query: 239 W-APSCPARDIPAPSTLCTSRTPRDTPSPR 153
P P +P+ T+ P D+ SP+
Sbjct: 166 QPPPPPPPPSVPSTEAPVTANDPNDSQSPK 195
>At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger)
family protein low similarity to UbcM4-interacting
protein 4 [Mus musculus] GI:13991706; contains Pfam
profiles PF00097: Zinc finger C3HC4 type (RING finger),
PF01485: IBR (In Between Ring fingers) domain
Length = 213
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 2 KVYCP*PYCAATLAAMRLSRSS 67
+ YCP P C+A ++ + LS+S+
Sbjct: 101 RFYCPNPRCSALMSKIELSKST 122
>At2g28130.1 68415.m03417 expressed protein
Length = 458
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 289 NLMKSIIFVVAMSNWMESLTLI 354
NL K IF+V NW+ S TL+
Sbjct: 390 NLFKMYIFLVLAENWLFSSTLV 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,147
Number of Sequences: 28952
Number of extensions: 252610
Number of successful extensions: 806
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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