Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0639.Seq
         (459 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   3.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   3.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   4.2  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   4.2  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 195 TIINWNCKFLHYYDCISYFYI 257
           T I W  KFL     I+ F++
Sbjct: 51  TYIEWGVKFLKVVTIITVFFV 71


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 195 TIINWNCKFLHYYDCISYFYI 257
           T I W  KFL     I+ F++
Sbjct: 51  TYIEWGVKFLKVVTIITVFFV 71


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 31  SSACCLRTCDN 63
           +  CCLRTC +
Sbjct: 188 NKCCCLRTCSS 198


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = -3

Query: 310 ILFVFTNIFYSVVL 269
           ++F+F N+F+ V++
Sbjct: 97  LIFIFVNVFFWVII 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,499
Number of Sequences: 336
Number of extensions: 1779
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)