Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0639.Seq
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    25   7.3  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    24   9.7  

>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 251 LYHKFRQDYTIKNISKDKQYLIYSQFDN*RQEQKFAINSMHACVRQY 391
           L HK  ++   K   + K+YL+  Q    ++E    ++S  A V ++
Sbjct: 430 LQHKINKEIEQKITQRHKEYLLTEQLKQIKRELGQELDSKEALVTEF 476


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 419 KEDITHTTYHIDEHT 375
           KE + HT+Y++D HT
Sbjct: 312 KEVVYHTSYNMDSHT 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,475
Number of Sequences: 5004
Number of extensions: 27022
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)