Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0639.Seq
         (459 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0278 - 2016172-2016262,2017057-2017140,2017701-2017837,201...    28   3.1  

>12_01_0278 -
           2016172-2016262,2017057-2017140,2017701-2017837,
           2017961-2018230,2018306-2018430,2018515-2018646,
           2018744-2018821,2019177-2019220,2019803-2019981,
           2020168-2020428,2020528-2020655,2020749-2020853,
           2020932-2021073
          Length = 591

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 168 LVARGSRNSTIINWNCKFLHYYDC 239
           + ARG +  T++  +CKFL Y  C
Sbjct: 461 MAARGQQFPTVVTHDCKFLSYSGC 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,566,312
Number of Sequences: 37544
Number of extensions: 129934
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)