Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0639.Seq
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>Z78542-6|CAB01749.2|  695|Caenorhabditis elegans Hypothetical
           protein F20D1.7 protein.
          Length = 695

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 251 LYHKFRQDYTIKNISKDKQYLI 316
           LY+ FR  Y + N+S DK+YLI
Sbjct: 566 LYNMFRS-YNLVNLSADKEYLI 586


>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1

Query: 153 AIKTNVLILRRFSRHFKNIQVPKTRNVLTLIIAS 52
           AI  N +ILR F +HF+NIQ  + +   +L+I S
Sbjct: 211 AIIVNFVILR-FVKHFENIQSKRIQLTQSLLIQS 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,596,274
Number of Sequences: 27780
Number of extensions: 149525
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)