Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0639.Seq
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.4  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   6.4  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   6.4  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   6.4  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 243 KYNHNSVETYNSN*L*SNFDYRGPLVSI 160
           KYN+N+   YN+N       Y+  +++I
Sbjct: 97  KYNYNNKYNYNNNNYNKKLYYKNYIINI 124


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 59  SQVRKQHAEELIY 21
           SQ R QHA ++IY
Sbjct: 792 SQQRHQHAAQMIY 804


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 310 ILFVFTNIFYSVVLA 266
           +L  +TNI+Y ++LA
Sbjct: 106 VLSCWTNIYYIIILA 120


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 310 ILFVFTNIFYSVVLA 266
           +L  +TNI+Y ++LA
Sbjct: 159 VLSCWTNIYYIIILA 173


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 373 MHTIYCKLLFLTLVVKLRID*ILF 302
           +H+I+  ++ +TLV+    D +LF
Sbjct: 3   IHSIFLLMVSITLVIAEESDNVLF 26


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 373 MHTIYCKLLFLTLVVKLRID*ILF 302
           +H+I+  ++ +TLV+    D +LF
Sbjct: 3   IHSIFLLMVSITLVIAEESDNVLF 26


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 373 MHTIYCKLLFLTLVVKLRID*ILF 302
           +H+I+  ++ +TLV+    D +LF
Sbjct: 3   IHSIFLLMVSITLVIAEESDNVLF 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,725
Number of Sequences: 438
Number of extensions: 2081
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)