Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0639.Seq
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58060.1 68414.m06580 helicase domain-containing protein cont...    27   4.6  
At3g59040.1 68416.m06581 pentatricopeptide (PPR) repeat-containi...    27   8.1  
At1g47350.1 68414.m05242 F-box family protein-related contains T...    27   8.1  

>At1g58060.1 68414.m06580 helicase domain-containing protein
           contains similarity to SP|P24785 Dosage compensation
           regulator (Male-less protein) (No action potential
           protein) {Drosophila melanogaster}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 1459

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 177 RGSRNSTIINWNCKFLHYYDCISYFYITN 263
           RG +N  +  W   +L   DC++ FY+++
Sbjct: 848 RGKKNLVLAGWGDDYLLSEDCLNPFYVSS 876


>At3g59040.1 68416.m06581 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 583

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 389 IDEHTHAYYLLQTFVLDVSCQIENRLNIVCL 297
           +    H+   LQ  +++V  +I+NR  +VC+
Sbjct: 13  VPSSNHSQRKLQNNIINVGVKIQNRFRVVCM 43


>At1g47350.1 68414.m05242 F-box family protein-related contains
           TIGR01640: F-box protein interaction domain
          Length = 528

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 416 EDITHTTYHIDEHTHAYYLLQTF--VLDVSCQIENRL 312
           +++ H T  ++E+   +YLL TF  + D   Q+ +RL
Sbjct: 6   QNLRHETRSVEEYAEEFYLLLTFNDINDSQTQLVSRL 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,582,671
Number of Sequences: 28952
Number of extensions: 122364
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)