Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0638.Seq
         (479 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.27 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   2.6  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   2.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   3.4  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   5.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 193 YSLFTFRRIHFVYFCVMFLWY*FCNVVNAFGIFVWCLLLV 74
           YS F    IH +++CV+ +         AF +F   LLL+
Sbjct: 216 YSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLL 255


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = +2

Query: 50  QSSASNSRHQEQTPYKYTESINYVTESIPQKHYT 151
           +  +   + +E+ PY Y   I     + P+K  T
Sbjct: 72  EKESEEKKSKEKPPYSYNALIMMAIRNSPEKRLT 105


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 201 LLTILCSLSEGFILYISV*CFCGIDSVT*LMLSVYLYGVCS 79
           +L +L SL  GF+LY S   F   ++   + LSV++Y + S
Sbjct: 186 VLQLLSSL--GFLLYASKKQFTFEETFAIIHLSVFVYTLVS 224


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +2

Query: 89  PYKYTESINYVTESIPQKHYT--EIYK 163
           PY Y   I    ++ PQK  T  EIY+
Sbjct: 142 PYSYISLITMAIQNSPQKMLTLSEIYQ 168


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 127 INTTETLHRNIQ 162
           I++TETL RNIQ
Sbjct: 287 ISSTETLLRNIQ 298


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 20  LFKANVQYIDQSSASNSRHQEQTPYKYTESI 112
           LF    + ID+      RH     YKYT +I
Sbjct: 19  LFLLCPRSIDEKIKRQERHSFYKIYKYTYNI 49


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +2

Query: 446 HVPHYTVRCSY 478
           H  HYT  C Y
Sbjct: 79  HTTHYTCHCPY 89


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 398 RSPKLSTLYDSDGTTL 351
           RSP ++ L   DGTT+
Sbjct: 702 RSPSVTDLSTKDGTTV 717


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,848
Number of Sequences: 336
Number of extensions: 2247
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)