Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0638.Seq
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U97194-2|AAN84846.1|  806|Caenorhabditis elegans Prion-like-(q/n...    28   4.0  
U97194-1|AAK68236.1|  788|Caenorhabditis elegans Prion-like-(q/n...    28   4.0  
AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative MAP-...    28   4.0  
Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 128 SIPQKHYTEIYKMNPSESEQRIVNKQINFDDALETE 235
           +IP++H  E+Y MN S+ E  ++N   + ++ +  E
Sbjct: 4   AIPKQHSAEVYPMNLSDEEIDVINSGDDDEEIMRGE 39


>U97194-2|AAN84846.1|  806|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform b protein.
          Length = 806

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/80 (20%), Positives = 32/80 (40%)
 Frame = +2

Query: 35  VQYIDQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINF 214
           +  + +S  +  R Q  TP   +ES++      PQ+ +     M P   +  ++ +Q   
Sbjct: 687 IHELAKSRENQQRQQSATPKTPSESVSTTGVVTPQRQFLPPQMMQPGTPQSILLQQQQQQ 746

Query: 215 DDALETELADSDTIQKIVFQ 274
               +   A    IQ++  Q
Sbjct: 747 QQQQQQAAAQHQIIQQMQMQ 766


>U97194-1|AAK68236.1|  788|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform a protein.
          Length = 788

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/80 (20%), Positives = 32/80 (40%)
 Frame = +2

Query: 35  VQYIDQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINF 214
           +  + +S  +  R Q  TP   +ES++      PQ+ +     M P   +  ++ +Q   
Sbjct: 669 IHELAKSRENQQRQQSATPKTPSESVSTTGVVTPQRQFLPPQMMQPGTPQSILLQQQQQQ 728

Query: 215 DDALETELADSDTIQKIVFQ 274
               +   A    IQ++  Q
Sbjct: 729 QQQQQQAAAQHQIIQQMQMQ 748


>AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative
           MAP-like protein protein.
          Length = 788

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/80 (20%), Positives = 32/80 (40%)
 Frame = +2

Query: 35  VQYIDQSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINF 214
           +  + +S  +  R Q  TP   +ES++      PQ+ +     M P   +  ++ +Q   
Sbjct: 669 IHELAKSRENQQRQQSATPKTPSESVSTTGVVTPQRQFLPPQMMQPGTPQSILLQQQQQQ 728

Query: 215 DDALETELADSDTIQKIVFQ 274
               +   A    IQ++  Q
Sbjct: 729 QQQQQQAAAQHQIIQQMQMQ 748


>Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.10 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 152 EIYKMNPSESEQRIVNKQINFDDAL 226
           E +KM P E E+   N  +N+DDA+
Sbjct: 378 EHFKMGPKEKEEVEKNVALNYDDAI 402


>Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.5 protein.
          Length = 673

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 152 EIYKMNPSESEQRIVNKQINFDDAL 226
           E +KM P E E+   N  +N+DDA+
Sbjct: 378 EHFKMGPKEKEEVEKNVALNYDDAI 402


>Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 295 PLNLR*EQDFXGSFTNNVPKVVPSESYKVES 387
           P+N + E  F     N + K+V S  YK+E+
Sbjct: 203 PVNFQRELKFFRDEQNRIKKIVSSRKYKIET 233


>Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 295 PLNLR*EQDFXGSFTNNVPKVVPSESYKVES 387
           P+N + E  F     N + K+V S  YK+E+
Sbjct: 203 PVNFQRELKFFRDEQNRIKKIVSSRKYKIET 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,039,413
Number of Sequences: 27780
Number of extensions: 192561
Number of successful extensions: 571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)