Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0638.Seq
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32090.1 68414.m03949 early-responsive to dehydration protein...    30   0.70 
At3g03730.1 68416.m00378 F-box family protein contains F-box dom...    29   1.6  
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    27   5.0  
At1g42550.1 68414.m04906 expressed protein                             27   6.5  
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-...    27   8.7  
At5g26140.1 68418.m03109 lysine decarboxylase family protein con...    27   8.7  
At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger) fa...    27   8.7  
At4g33770.1 68417.m04794 inositol 1,3,4-trisphosphate 5/6-kinase...    27   8.7  
At4g30150.1 68417.m04287 expressed protein                             27   8.7  
At3g59110.1 68416.m06590 protein kinase family protein contains ...    27   8.7  
At1g79200.1 68414.m09234 expressed protein                             27   8.7  
At1g20830.1 68414.m02609 expressed protein                             27   8.7  

>At1g32090.1 68414.m03949 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 806

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 17  HLFKANVQYIDQSSASNSRHQEQTPY----KY-TESINYVTESIPQKHYTEIYKMNPSES 181
           H F+  V+    SS+    HQE+TP     K+ T+S + VTE     H+  +Y      S
Sbjct: 717 HSFEKEVELSSSSSSEKETHQEETPEVRVDKHETQSSSPVTELGTSSHHHHVYNSTSPSS 776


>At3g03730.1 68416.m00378 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 393

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +2

Query: 119 VTESIPQKHYTEIYKMNPSESEQRIVNKQINFDDALETEL 238
           +  S P+K + ++YK++P  SE R++ K I  D+AL  +L
Sbjct: 280 IISSNPKKCFVKLYKIDPKSSEWRLI-KSIG-DEALILDL 317


>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = +2

Query: 140 KHYTEIYKMNPSESEQRIVNKQIN--FDDALETELADSD--TIQKIVFQRRVLCQNLLI* 307
           KH  + +    ++  + +V+K +N  ++++L  E  D +  T   ++  +R+LC+  L  
Sbjct: 408 KHILKKFSQLTTDVRESLVSKVVNQLWENSLVKERLDLEGHTNSNLLLDKRLLCEEELEL 467

Query: 308 DKNKT 322
           D+N+T
Sbjct: 468 DQNET 472


>At1g42550.1 68414.m04906 expressed protein
          Length = 708

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 176 ESEQRIVNKQINFDDALETELAD 244
           E +  +V+K + FDD LETE +D
Sbjct: 251 EPDFEVVDKGVEFDDDLETEKSD 273


>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 916

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 188 RIVNKQINFDDALETELADSDTIQKIVFQRRVLCQNLLI*DKNKT 322
           R  N  I  D+ L  E  D D  QKIV  ++   +  +I +  +T
Sbjct: 736 RTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAIICNHQRT 780


>At5g26140.1 68418.m03109 lysine decarboxylase family protein
           contains Pfam profile PF03641: decarboxylase family
           protein
          Length = 143

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 334 FTNNVPKVVPSESYKVESXGDLPLMNYN 417
           +T +   +   +S+KVE  GD PL+N N
Sbjct: 113 YTPSHKYIASHQSWKVEPLGDYPLLNEN 140


>At5g02750.1 68418.m00217 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 283

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 320 SCSYLRLRGFGIKPASEKLFSVSYRNLLALSLMHHQNLFA 201
           S S+   R  G   +S  LFS++ R+LL+LSL    +L A
Sbjct: 30  SISHHHRRRLGAVLSSPTLFSLTLRHLLSLSLPDKTHLIA 69


>At4g33770.1 68417.m04794 inositol 1,3,4-trisphosphate 5/6-kinase
           family protein contains Pfam doamin PF05770 Inositol 1,
           3, 4-trisphosphate 5/6-kinase; contains weak similarity
           to inositol phosphate kinase (GI:27549256) [Zea mays]
          Length = 391

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 119 VTESIPQKHYTEIYKMNPSESEQRIVNKQINFDDALETELAD 244
           V E   QKH  E+  ++P  S QRI N+Q       + +L+D
Sbjct: 141 VIEDYQQKH-PEVTVLDPPGSIQRIYNRQSMLQGMADLKLSD 181


>At4g30150.1 68417.m04287 expressed protein
          Length = 2009

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 53  SSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSES 181
           + ASN+R  E+ P+K  ++      S  + HY+   ++   +S
Sbjct: 442 TKASNARQAEERPWKLADTATNDNGSSTKSHYSSSLRLETRKS 484


>At3g59110.1 68416.m06590 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 512

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 175 RRIHFVYFCVMFLWY*FCNVVNAFGIFVWCLL 80
           +++ F+    M LW   C VV  F + V+C+L
Sbjct: 13  KKVSFLGLKGMKLWVLICLVVGTFVVLVFCIL 44


>At1g79200.1 68414.m09234 expressed protein
          Length = 159

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 50  QSSASNSRHQEQTPYKYTESINYVTESIPQKHYTEIYKMNPSESEQRIVNKQINFDDALE 229
           +SS S     ++   K+TES + + E IP+    + +  N   +      K+  F+D L 
Sbjct: 58  KSSTSKKSKDDKPKKKHTESDHKLKEGIPELSMEDYFSKNNEFATWLKEEKRTYFND-LT 116

Query: 230 TELA 241
           TE A
Sbjct: 117 TEAA 120


>At1g20830.1 68414.m02609 expressed protein
          Length = 349

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 11  ANHLFKANVQYIDQSSASNSRHQEQ-TPYK 97
           ANH F   V  IDQ  A N+ +Q+Q  P++
Sbjct: 251 ANHPFATTVSDIDQDLAQNNVYQKQGVPFR 280


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,181,715
Number of Sequences: 28952
Number of extensions: 167121
Number of successful extensions: 427
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)