Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0637.Seq
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.29 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    24   6.2  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    24   8.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    24   8.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 0.29
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 37   PAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDP 144
            PAV A + T P VV  V HP   P   I T   +DP
Sbjct: 1293 PAVSASISTPPAVVPTVQHPQ--PTKQIPTAAVKDP 1326


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
 Frame = +1

Query: 85  VYHPPAVPVTLIQTQTARDPVHPVV-----AALMDTVPTV--VMEVYHPPAVPV 225
           V+ PPA PV        + P  PVV           VP V   + V  PP  PV
Sbjct: 529 VHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPV 582


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 214 AVPVXLIQTQTXRDQYIRW*QHLWIQXQQSRWK 312
           A PV  +++    ++  R  + LW++ +Q +WK
Sbjct: 72  ATPVKGVESSEPTEKKKRNKEALWLRARQKKWK 104


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 49   ALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHP 153
            A+    P  V E YHPP    T  +    + P HP
Sbjct: 922  AIASPPPPKVGETYHPPTASGT--RVPPVQQPSHP 954


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,224
Number of Sequences: 5004
Number of extensions: 16468
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)