Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0637.Seq
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0482 + 22614097-22614729,22614859-22615182,22615291-226153...    31   0.21 
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165...    30   0.48 
04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819     27   4.4  
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701...    27   5.9  

>01_05_0482 +
           22614097-22614729,22614859-22615182,22615291-22615396,
           22615628-22615668
          Length = 367

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 21/50 (42%), Positives = 25/50 (50%)
 Frame = +1

Query: 40  AVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTV 189
           AV A +   P     V+ P A  +TLI    A DP+  VVA  MD V TV
Sbjct: 5   AVAAALAPAPATA-PVFSPAAAGLTLIAAAAA-DPIAAVVAGAMDGVVTV 52


>12_01_0220 -
           1657554-1657620,1657943-1658109,1658110-1658267,
           1658362-1658447,1658559-1658808,1659194-1660320,
           1662207-1662351,1663555-1663696,1663775-1663828,
           1663914-1663985,1664710-1664778,1664885-1664926,
           1665024-1665092,1665257-1665394,1665518-1665628,
           1665704-1665836,1666834-1666889,1667191-1667901
          Length = 1198

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +1

Query: 91  HPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVXLIQTQTXRDQYIRW 270
           H P  P+ L+  +  R P+   + +L       V+++YH     V L    T     +RW
Sbjct: 581 HSPPSPILLLLVEGVRVPLPRTIRSLALVAMITVVDLYHVLTAVVPLYVAMTLAYASVRW 640


>04_04_0189 + 23438794-23439053,23439178-23439400,23439947-23440819
          Length = 451

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +1

Query: 97  PAVPVTLIQTQTARD-PVHPVVAALMDTVPTVVME--VYHPPA 216
           P+     +   T RD P+ P  AA  DT+P  +     +HPPA
Sbjct: 22  PSNTTVTLPPLTLRDVPLLPSAAAATDTIPNPISRHPYFHPPA 64


>06_03_1511 -
           30669292-30669401,30669894-30669930,30670012-30670107,
           30670186-30670281,30670679-30670828,30670956-30671100,
           30671178-30671251,30671325-30671445,30671697-30671821,
           30671898-30672047,30672249-30672324,30672496-30672557,
           30672597-30672839,30673354-30673683,30673776-30673932,
           30674008-30674139,30674219-30674277,30674734-30674798,
           30674878-30675094,30675413-30675499,30675655-30675750,
           30675938-30676003,30676096-30676287,30676380-30676532,
           30676812-30677052,30677322-30677515,30678212-30678348,
           30678474-30678480,30678708-30678830,30679370-30679427,
           30680018-30680090,30680493-30681765
          Length = 1714

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 94  PPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVY 204
           PPA+ V  +   T R P+H ++A L    P   +  Y
Sbjct: 60  PPALDVCTLSFPTKRQPIHRLLARLAPADPDTFLLDY 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,093,336
Number of Sequences: 37544
Number of extensions: 119187
Number of successful extensions: 338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)