Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0637.Seq
(359 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 35 0.017
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 33 0.092
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 32 0.12
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 30 0.49
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.49
SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1) 30 0.65
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_43281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1) 27 6.1
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_57684| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 35.1 bits (77), Expect = 0.017
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -3
Query: 195 HHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCYYRR 37
HH C C H+ CY+R + C + ++ C H++H C+ + CY R
Sbjct: 20 HHYCCYCHHRYCYYRHHHY--CWYRHHYHYPC--YRHYYHRCYRHHYCCYRHR 68
Score = 33.5 bits (73), Expect = 0.053
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 195 HHDCWNCIHKCCY-HRMYWIPRCLSLNQCYWNCRWMIHFHHDCW-NCIHKCY 46
H+ C+ H CCY H Y C + Y C + H+H+ C+ + H+CY
Sbjct: 13 HNRCYRHHHYCCYCHHRY----CYYRHHHY--CWYRHHYHYPCYRHYYHRCY 58
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 32.7 bits (71), Expect = 0.092
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = -3
Query: 216 CRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCYYR- 40
CRW + D C C + + R ++ C CRW + D C C +R
Sbjct: 115 CRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWRI 170
Query: 39 -RMY*ILRCXS 10
R I RC S
Sbjct: 171 NRQADIHRCKS 181
Score = 31.1 bits (67), Expect = 0.28
Identities = 15/59 (25%), Positives = 22/59 (37%)
Frame = -3
Query: 216 CRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCYYR 40
CRW + D C C + + R ++ C CRW + D C C +R
Sbjct: 98 CRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR 152
Score = 31.1 bits (67), Expect = 0.28
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = -3
Query: 216 CRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCYYR 40
CRW + D C C + + R ++ C CRW I+ D C C ++
Sbjct: 132 CRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRINRQADIHRCKSTCRWQ 186
Score = 28.3 bits (60), Expect = 2.0
Identities = 14/59 (23%), Positives = 21/59 (35%)
Frame = -3
Query: 216 CRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCYYR 40
C W + D C C + + R ++ C CRW + D C C +R
Sbjct: 81 CPWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR 135
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/45 (26%), Positives = 18/45 (40%)
Frame = -3
Query: 174 IHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCYYR 40
IH C + + R ++ C CRW + D C C +R
Sbjct: 74 IHTCKSTCPWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR 118
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -3
Query: 216 CRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMI 88
CRW + D C C + I R +++C CRW +
Sbjct: 149 CRWRLDRQADIHTCKSTCRWR----INRQADIHRCKSTCRWQL 187
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 32.3 bits (70), Expect = 0.12
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +1
Query: 37 PAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPA 216
P VV +DT+P VV + P V L R P V +DT+P VV + P
Sbjct: 238 PRVVTRLDTLPRVVTRLDTLPRVVTRLDTLPRTRLDTLPRVVTRLDTLPRVVTRLDTLPR 297
Query: 217 VPVXL 231
V L
Sbjct: 298 VVTCL 302
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -3
Query: 186 CWNCIHKCCYHRMYWIPRCLSLNQCYW-NCRWMIHFHHDCWNCIHKC 49
C+ + CY+ Y+ C CY+ C + H ++ C+ C C
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYCCYYCCCSC 522
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = -3
Query: 162 CYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCYYRRMY*ILRC 16
CY Y+ C CY+ C + ++ C+ C YY Y C
Sbjct: 472 CYCYCYYYCYCYCYYYCYYYC--YCYCYYCCYYCYCYYYYHHYYCCYYC 518
>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 30.3 bits (65), Expect = 0.49
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 37 PAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVH--PVVAALMDTVPTVVMEVYHP 210
P++ + VP++ V P++ ++ Q ++ + V P + L+ VP++ V H
Sbjct: 280 PSIKTSVTQVPSIKTSVTQVPSIKTSVTQFRSIKTLVTQVPSIKTLVTQVPSIKTSVTHV 339
Query: 211 PAVPVXLIQTQTXR 252
P++ + Q + +
Sbjct: 340 PSIKTSVTQVPSGK 353
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 37 PAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPA 216
P++ L+ VP++ V H P++ ++ Q + + V V + T V + P A
Sbjct: 320 PSIKTLVTQVPSIKTSVTHVPSIKTSVTQVPSGKTSVTQVPSG--KTRHAVSFKQDIPDA 377
Query: 217 VPVXL 231
VP+ L
Sbjct: 378 VPIPL 382
>SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1)
Length = 424
Score = 29.9 bits (64), Expect = 0.65
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 37 PAVVALMDT-VPTVVMEVYHPPAVPVTLIQTQTARDPVH-PVVAALMDTVPTVVMEVYHP 210
P +V ++DT T V H P V VTL++ +A + VH P+V L+ V V H
Sbjct: 56 PVLVKILDTGKVTSAKVVVHIPLV-VTLLKATSAEEVVHIPLVVTLLKVTSAKV--VVHI 112
Query: 211 PAVPVXLIQTQTXR 252
P V V L++ + +
Sbjct: 113 PLV-VTLVEVTSAK 125
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 2.0
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Frame = +1
Query: 31 VHPAVVALMDTV----PTVVMEVYHPPAVPV--TLIQTQTARDPVHPVVAALMDTVPTVV 192
+HP V+ L TV PTV+ HP + + T+I +HP V L TV +
Sbjct: 23 LHPTVIHLHPTVIFLHPTVIH--LHPTVLNLHPTIINLHPTVIHIHPTVIHLHPTVINLH 80
Query: 193 MEVYHPPAVPVXLIQT 240
V HP + L T
Sbjct: 81 PTVIHPHPTVINLHPT 96
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +1
Query: 31 VHPAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDP----VHPVVAALMDTV----PT 186
+HP V+ L TV + V HP + L T +P ++P V L TV PT
Sbjct: 65 IHPTVIHLHPTVINLHPTVIHPHPTVINLHPTVIHENPTVINLNPTVILLHPTVIFLRPT 124
Query: 187 VVMEVYHPPAV 219
V++ HP +
Sbjct: 125 VIL--LHPTVI 133
>SB_43281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 79 MEVYHPPAVPVTLIQT-QTARD-PVHPVVAALMDTVP 183
ME P + + +T +TA D PVHP+ MDT+P
Sbjct: 1 MEESEQPKIASEVEETPETASDLPVHPLAPVSMDTIP 37
>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1661
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Frame = -3
Query: 219 NCRWMIHFHHDCWNCIHKCCYHRMYWIPR---CLSLNQCYWNCRWMIHFHHDCWNC 61
NC H DC + H+ HR IPR C N+ R + H C C
Sbjct: 562 NCGRPFHRSEDCPSGQHRLATHRSPRIPRNNVCFDFNRVTGCSRQACIYPHVCQKC 617
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 34 HPAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVH-PVVAA 165
HP VA P+ V H PA P L P+H P AA
Sbjct: 275 HPIPVATSKVPPSGVSSAPHKPAQPGLLAHFSQTHSPLHMPTSAA 319
>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
Length = 338
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 67 PTVVMEVYHPPAVPVTLIQTQTARDPVH 150
P V E++HPP V V Q PVH
Sbjct: 5 PIVAPEIHHPPQVVVHTPYEQQQLTPVH 32
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 135 RCLSLNQCYWNCRWMIHFHHDCWNCI--HKCYYRRMY 31
RC+ +N+C N W HDC N + ++C R Y
Sbjct: 2143 RCIDINECERNNGWC---EHDCINILGTYRCRCRDGY 2176
>SB_48350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 26.6 bits (56), Expect = 6.1
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 82 EVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVXLIQTQTXRDQY 261
EV PPA + TQ+ P A ++T P V E PP +P+ T + Y
Sbjct: 824 EVVPPPAEMESSTTTQSPETP------AQVET-PNAVAEKQTPPIIPIRRSSRTTTQPSY 876
Query: 262 IR 267
+R
Sbjct: 877 LR 878
>SB_57684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 26.2 bits (55), Expect = 8.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 289 VSISAATTGCTGPALFEFE-SVXLELPVDDTL 197
V+ S ATTGCT LFE E + ++L D L
Sbjct: 277 VTPSLATTGCTKEDLFEMEKKLEIKLVAVDAL 308
>SB_39311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 916
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 82 EVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVXLIQTQTXRDQY 261
EV PPA + TQ+ P A ++T P V E PP +P+ T + Y
Sbjct: 557 EVVLPPAEMESSTTTQSPETP------AQVET-PNAVAEEQTPPIIPIRRSSRTTTQPSY 609
Query: 262 IR 267
+R
Sbjct: 610 LR 611
>SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 26.2 bits (55), Expect = 8.0
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +1
Query: 82 EVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVXLIQTQTXRDQY 261
EV PPA + TQ+ P A ++T P V E PP +P+ T + Y
Sbjct: 668 EVVLPPAEMESSTTTQSPETP------AQVET-PNAVAEEQTPPIIPIRRSSRTTTQPSY 720
Query: 262 IR 267
+R
Sbjct: 721 LR 722
>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 26.2 bits (55), Expect = 8.0
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +1
Query: 64 VPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVXLIQT 240
VP V + P +PV +QT D P+ VP V + P +PV +QT
Sbjct: 366 VPKVQTTIDMPGPIPVPKVQTTI--DMPGPIDMPDPTPVPKVQTTIDMPDPIPVPKVQT 422
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,055,464
Number of Sequences: 59808
Number of extensions: 143342
Number of successful extensions: 620
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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