Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0637.Seq
         (359 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY330181-1|AAQ16287.1|  156|Anopheles gambiae odorant-binding pr...    23   3.5  
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    23   4.6  
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    22   8.0  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    22   8.0  

>AY330181-1|AAQ16287.1|  156|Anopheles gambiae odorant-binding
          protein AgamOBP55 protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 63 CIHKCYYR 40
          CIH+CYY+
Sbjct: 61 CIHQCYYK 68


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 34  HPAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMD-TVPTVVMEVY 204
           HP  +A    VP  V +VY P   P+ +   Q  + P++ V+  +++  VP  V + Y
Sbjct: 180 HPVPIA----VPHYV-KVYIPQPYPLQVNVEQPIKIPIYKVIPKVIEKPVPYTVEKPY 232


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 141 IPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCY 46
           +P    L   +W     +   H C+N I  CY
Sbjct: 538 LPSSWDLLPYFWFAFHWLAMSHSCYNPIIYCY 569


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = -3

Query: 174 IHKCCYHRMY-WIPRCLSLNQCYWNCRWMIHFHHD 73
           +HK  +H MY W P    L       R  +   HD
Sbjct: 355 LHKSPHHDMYWWTPAIKRLRDDCLAARERVQLSHD 389


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,176
Number of Sequences: 2352
Number of extensions: 4479
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 26654730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)