Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0637.Seq
         (359 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens ...    36   0.050
AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens ...    31   1.4  
L02547-1|AAA35691.1|  431|Homo sapiens cleavage stimulation fact...    29   4.3  
BT007138-1|AAP35802.1|  431|Homo sapiens cleavage stimulation fa...    29   4.3  
BC030023-1|AAH30023.1|  440|Homo sapiens glycosyltransferase 8 d...    29   4.3  
BC007425-1|AAH07425.1|  431|Homo sapiens cleavage stimulation fa...    29   4.3  
BC001011-1|AAH01011.1|  431|Homo sapiens cleavage stimulation fa...    29   4.3  
AL121914-12|CAI19328.1|  431|Homo sapiens cleavage stimulation f...    29   4.3  
AL121914-11|CAC12718.2|  345|Homo sapiens cleavage stimulation f...    29   4.3  
AK098749-1|BAC05403.1|  141|Homo sapiens protein ( Homo sapiens ...    29   4.3  
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ...    28   7.6  

>AK098423-1|BAC05305.1|  485|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25557 fis, clone JTH02756. ).
          Length = 485

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
 Frame = +1

Query: 40  AVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVV--------M 195
           +V+ ++ T+PT++M     P V VT+IQT  A        A     VP+ V        M
Sbjct: 384 SVMLILRTMPTLMMRTEDRPKVAVTMIQTAAAMGVASGAGATAAAPVPSPVAASTRPRRM 443

Query: 196 EVYHPPAVPVXLIQTQTXRDQYIRW*QHLWIQXQQS 303
            V     +PV LI T T       W +H + + Q +
Sbjct: 444 AVKLQLLIPVKLIVTVTESQGIQGWFRHHYCEQQST 479


>AK055979-1|BAB71063.1|  710|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31417 fis, clone NT2NE2000327, weakly similar to
           GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
          Length = 710

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   LMQAXTA*DLVHPAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAA-LMDT 177
           L  A TA   V   +   + + P V      PPAV  T+  T+ A+ PV    AA   D+
Sbjct: 229 LPNAATAQPAVQHIIHQPIQSRPPVTTSNAIPPAVVATVSATR-AQSPVITTTAAHATDS 287

Query: 178 VPTVVMEVYHPPAVPVXLIQTQTXRD 255
                + + HPP+  + + +    RD
Sbjct: 288 ALRPTLSIQHPPSAAISIQRPAQSRD 313


>L02547-1|AAA35691.1|  431|Homo sapiens cleavage stimulation factor
           protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 100 AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 210
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>BT007138-1|AAP35802.1|  431|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 1, 50kDa protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 100 AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 210
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>BC030023-1|AAH30023.1|  440|Homo sapiens glycosyltransferase 8
           domain containing 3 protein.
          Length = 440

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 135 RCLSLNQCYWNCRWMIHFHHDCWNCIHKCYYR 40
           RC   + CYWN  WM+       NC  +  +R
Sbjct: 74  RCKDFSLCYWNPYWMLPSDVCGMNCFWEAAFR 105


>BC007425-1|AAH07425.1|  431|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 1, 50kDa protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 100 AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 210
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>BC001011-1|AAH01011.1|  431|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 1, 50kDa protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 100 AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 210
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>AL121914-12|CAI19328.1|  431|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 1, 50kDa protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 100 AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 210
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>AL121914-11|CAC12718.2|  345|Homo sapiens cleavage stimulation
           factor, 3' pre-RNA, subunit 1, 50kDa protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 100 AVPVTLIQTQTARDPV--HPVVAALMDTVPTVVMEVYHP 210
           A+P+ ++  +TA+  +  HPV+  L D V  V    +HP
Sbjct: 145 AMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHP 183


>AK098749-1|BAC05403.1|  141|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25883 fis, clone CBR02735. ).
          Length = 141

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 198 FHHDCWNCIHKCCYHRMYWIPRCL--SLNQCYW 106
           +H  C    HK  +HR+ W+  CL    +Q YW
Sbjct: 54  YHGVCRELAHKETWHRLSWLVACLWVHYDQGYW 86


>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
            protein.
          Length = 1362

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 67   PTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVP 222
            P V++E   PPA P+T +Q Q     +  V       +P+V ++   PP +P
Sbjct: 909  PQVLLEDEEPPAPPLTSMQMQLYLQQLQKVQPP-TPLLPSVKVQSQPPPPLP 959


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,754,903
Number of Sequences: 237096
Number of extensions: 659380
Number of successful extensions: 1800
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)