Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0637.Seq
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    28   1.7  
U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical pr...    27   3.0  
U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical pr...    27   3.0  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    27   3.9  
U10401-9|AAA19054.4|  771|Caenorhabditis elegans Hypothetical pr...    24   5.8  
Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical pr...    26   6.9  
Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AF016432-7|AAB65382.1|  342|Caenorhabditis elegans Seven tm rece...    26   9.1  

>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/62 (25%), Positives = 20/62 (32%)
 Frame = +1

Query: 37  PAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPA 216
           P  +    T PT +      P  P T+  T T   P  P       T PT    +   P 
Sbjct: 165 PTTIKSTPTTPTTMKSTPTTPTTPTTMKSTPTT--PTTPTTMKSTPTTPTTPTTMKSTPT 222

Query: 217 VP 222
            P
Sbjct: 223 TP 224



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 16/62 (25%), Positives = 20/62 (32%)
 Frame = +1

Query: 37  PAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPA 216
           P  +    T PT +      P  P T+  T T   P  P       T PT    +   P 
Sbjct: 279 PTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTT--PTTPTTMKSTPTTPTTPTTMKSTPT 336

Query: 217 VP 222
            P
Sbjct: 337 TP 338


>U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical
           protein ZC317.7 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 142 PVHPVVAALMDTVPTVVMEVYHP-PAVPVXLIQTQT 246
           P+HP +AA+  T    +M V HP P +P+    +Q+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQS 238


>U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical
           protein C14C11.2 protein.
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 142 PVHPVVAALMDTVPTVVMEVYHP-PAVPVXLIQTQT 246
           P+HP +AA+  T    +M V HP P +P+    +Q+
Sbjct: 203 PMHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQS 238


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +1

Query: 25   DLVHPAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDT 177
            +L+   +     T+ TV M    PP  P T   T T   P     + L  T
Sbjct: 1129 NLIGSMIAYRESTIDTVSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPST 1179


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 114 CYWNCRWMIHFHHDCWNC 61
           C+W CR  +  HH C NC
Sbjct: 62  CFW-CRCFMDVHHRCPNC 78


>U10401-9|AAA19054.4|  771|Caenorhabditis elegans Hypothetical
           protein T20B12.1 protein.
          Length = 771

 Score = 24.2 bits (50), Expect(2) = 5.8
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 117 QCYWNCRWMIHFHHDCWNCIHKCYYR 40
           QCY  C  +   H + WN +   Y R
Sbjct: 506 QCYHRCVSLQPDHFEAWNNLSAAYIR 531



 Score = 20.6 bits (41), Expect(2) = 5.8
 Identities = 5/18 (27%), Positives = 8/18 (44%)
 Frame = -3

Query: 216 CRWMIHFHHDCWNCIHKC 163
           C W +    +   C H+C
Sbjct: 494 CAWKLENFKESTQCYHRC 511


>Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical
           protein F58A4.5 protein.
          Length = 786

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +1

Query: 70  TVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMD---TVPTVVMEVYHPP 213
           T ++    P A+P+ ++  Q+ +DP  P      +   T P +  + Y  P
Sbjct: 523 TTIITTVKPNALPIAIVAKQSEKDPACPAEWTQFNTNATAPALCFKRYEKP 573


>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 156 HRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCI 58
           +R+ W+P  L  N       W  +   DC++C+
Sbjct: 165 YRIKWLPSILFYNNSKSKPEWQHYVLVDCFSCV 197


>AF016432-7|AAB65382.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 226 protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 153 RMYWIPRCLSLNQCYWNC 100
           +++  P  L LN CYW C
Sbjct: 84  KLFGPPGLLILNSCYWGC 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,892,733
Number of Sequences: 27780
Number of extensions: 102712
Number of successful extensions: 397
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)